The Use of UV Resonance Raman Spectroscopy in the Analysis of Ionizing Radiation-induced Damage in DNA.

The Use of UV Resonance Raman Spectroscopy in the Analysis of Ionizing Radiation-induced Damage in DNA.
Author:
Publisher:
Total Pages:
Release: 2007
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ISBN:

Raman spectroscopy is a form of vibrational spectroscopy that is capable of probing biological samples at a molecular level. In this work it was used in the analysis of ionizing radiation-induced damage in DNA. Spectra of both simple, short-stranded DNA oligomers (SS-DNA) and the more complicated calf-thymus DNA (CT-DNA) were acquired before and after irradiation to a variety of doses from 0 to ~2000 Gy. In a technique known as ultraviolet resonance Raman spectroscopy (UVRRS), three UV wavelengths of 248, 257 and 264 nm were utilized in order to selectively enhance contributions from different molecular groups within the samples. Assignment of the spectral peaks was aided by the literature, as well as through analysis of UVRR spectra of short strands of the individual DNA bases obtained at each of the three incident UV wavelengths. Difference spectra between the irradiated and unirradiated samples were calculated and the samples exposed to ~2000 Gy showed significant radiation-induced features. Intensity increases of spectral peaks, observed primarily in the CT-DNA, indicated unstacking of the DNA bases and disruption of Watson-Crick hydrogen bonds, while intensity decreases of spectral peaks, observed only in the SS-DNA, indicated both base damage and the loss of structural integrity of the DNA molecule. The high molecular specificity of UVRRS allowed for precise identification of the specific bonds affected by the radiation, and the use of the varying incident wavelengths allowed for the observation of damage to moieties that would otherwise have been excluded. The use of UVRRS shows promise in the study of radiation-induced damage to DNA and would be well suited for extension to the study of more complicated biological systems.

Ultrafast Dynamics of Photoexcited DNA Nucleotides Probed with Femtosecond Stimulated Raman Spectroscopy

Ultrafast Dynamics of Photoexcited DNA Nucleotides Probed with Femtosecond Stimulated Raman Spectroscopy
Author: Joohyun Lee
Publisher:
Total Pages: 197
Release: 2020
Genre:
ISBN:

"The interaction between UV light and DNA molecules has been a very attractive research field because of not only the pharmaceutical relevance for UV-induced cancer problems but also the unique ultrafast dynamics of these photochemical systems. DNA molecules have undergone natural selection for millennia, but despite that evolution, their strong absorption of harmful UV light and their critical role in the reproduction of genetic information would seem to be irreconcilable properties. However, the relatively recent discovery that they undergo ultrafast nonradiative decay after absorbing UV light and thereby rapidly quench the excited state and prevent photodamage explains their photostability under UV irradiation. Ultrafast energy dissipation mechanism of DNA helps its photochemistry be very stable despite of countless interaction with sunlight. Spectroscopic tools to monitor ultrafast photo-induced events have become more prevalent and accurate as femtosecond laser techniques have been progressively developed. Until now, the applied methodologies have been inclined to monitor the lifetimes of excited states by femtosecond transient absorption and fluorescence up-conversion spectroscopy because they detect signals using the large cross-sections of electronic transitions. However, how the vibrational structures of excited-state DNA change during the ultrafast energy deactivation event is poorly studied. Here, we investigate this structural picture of the ultrafast dynamics of DNA with femtosecond stimulated Raman spectroscopy (FSRS). FSRS has been a very powerful time-resolved vibrational spectroscopy to monitor structural changes during ultrafast excited-state dynamics. To overcome inherently weak Raman signal, we utilized resonance Raman enhancement to boost the signal intensity with UV and visible Raman pump pulses generated by our whitelight-seeded stimulated Raman shifter with high-pressure hydrogen gas. In UV-resonance FSRS of DNA base monomers, hot ground-state vibrations were not observed but very broad vibrations with time constants comparable with excited-state lifetime were weakly shown in dGMP. In visible-resonance FSRS of dGMP, the broad linewidth signals were consistently observed more clearly with resonance Raman enhancement. The results from the resonance FSRS of dGMP indicate that dGMP assumes a broad distribution of out-of-plane structures during the ultrafast evolution on the excited-state potential energy surface"--Pages ix-xi

Radiation Induced Molecular Phenomena in Nucleic Acids

Radiation Induced Molecular Phenomena in Nucleic Acids
Author: Manoj Shukla
Publisher: Springer Science & Business Media
Total Pages: 677
Release: 2008-05-08
Genre: Science
ISBN: 1402081847

Comprehensive theoretical and experimental analysis of UV-radiation and low energy electron induced phenomena in nucleic acid bases (NABs) and base assemblies are presented in this book. NABs are highly photostable; the absorbed energy is dissipated in the form of ultrafast nonradiative decay. This book highlights the possible mechanisms of these phenomena which is important for all living species and discusses technical challenges in exploration of these processes.