Nuclear Pore Complexes and Nucleocytoplasmic Transport - Methods

Nuclear Pore Complexes and Nucleocytoplasmic Transport - Methods
Author:
Publisher: Elsevier
Total Pages: 553
Release: 2014-05-20
Genre: Science
ISBN: 0124171788

Volume 122 of Methods in Cell Biology describes modern tools and techniques used to study nuclear pore complexes and nucleocytoplasmic transport in diverse eukaryotic model systems (including mammalian cells, Xenopus, C. elegans, yeast). The volume enables investigators to analyze nuclear pore complex structure, assembly, and dynamics; to evaluate protein and RNA trafficking through the nuclear envelope; and to design in vivo or in vitro assays appropriate to their research needs. Beyond the study of nuclear pores and transport as such, these protocols will also be helpful to scientists characterizing gene regulation, signal transduction, cell cycle, viral infections, or aging. The NPC being one of the largest multiprotein complexes in the cell, some protocols will also be of interest for people currently characterizing other macromolecular assemblies. This book is thus designed for laboratory use by graduate students, technicians, and researchers in many molecular and cellular disciplines. Describes modern tools and techniques used to study nuclear pore complexes and nucleocytoplasmic transport in diverse eukaryotic model systems (mammalian cells, Xenopus, C. elegans, yeast) Chapters are written by experts in the field Cutting-edge material

The Nuclear Envelope

The Nuclear Envelope
Author: David Evans
Publisher: Garland Science
Total Pages: 320
Release: 2004-09-01
Genre: Science
ISBN: 0203643399

The Nuclear Envelope brings together the major current topics in nuclear envelope structure, transport, transcriptional regulation and cell signaling. The volume is divided into four sections: 1. Proteins of the nuclear envelope, including nuclear envelope proteomics, structure and function. 2. Nuclear pores and transport at the nuclear envelope, including pore complex structure, assembly and function and import and export pathways. 3. Nuclear envelope dynamics, including dynamics of lamina assembly and disassembly. 4. Nuclear signaling and transcription regulation, including signaling to the nucleus and spectrin repeat proteins and their implications or communication between the nucleus and cytoplasm.

Regulation of the Assembly and Function of the Nuclear Pore

Regulation of the Assembly and Function of the Nuclear Pore
Author: Valerie Anne Delmar
Publisher:
Total Pages: 122
Release: 2008
Genre:
ISBN:

The nucleus is the defining structure of eukaryotic cells. The nuclear envelope acts as a barrier between nucleus and cytoplasm. Nuclear pore complexes perforating the envelope control all traffic into and out of the nucleus, and thus act to regulate transcription, translation, and other essential cellular processes. During mitosis, the nuclear envelope from flies to mammals disassembles into its component parts, with the nuclear pore breaking into multiple subunits. The pore then reassembles in a step-wise process as the nuclear envelope reforms in late anaphase. The major focus of this thesis has been to better understand the assembly and function of the nuclear pore. It has resulted in three published papers and one paper in preparation. First, I participated, with postdoc Dr. Corine Lau, in a study of the novel vertebrate transmembrane nucleoporin, Ndc1. I resolved the topology of yeast Ndc1p and identified conserved amino acids to target for future functional studies (Chapter 1). In a second study, I participated in a collaboration with the laboratory of Dr. Pamela Silver at Harvard Medical School in identifying a new role for the vertebrate nuclear pore in the regulation of transcription. We found that in vertebrates, specific chromosomal regions move to the nuclear pore complexes during transcriptional activation (Chapter 2). Key work next centered on the mechanism of action of importin beta in negatively regulating nuclear membrane fusion and pore assembly. (The small GTPase, Ran, positively regulates both these processes.) A major unanswered question has been, which specific steps in nuclear pore assembly are regulated by importin beta or RanGTP. I determined, using Xenopus constructs, that importin beta is an authentic regulator of nuclear pore assembly and that, contrary to previously published results, Ran reverses this negative regulation (Chapter 3). Finally, a fourth study, done with Dr. Corine Lau, established that the distant importin beta relative, transportin, also negatively regulates nuclear membrane and pore assembly (Chapter 4). I showed that both transportin and importin beta act early to control the initial step of pore assembly: the binding of the pore-targeting protein ELYS to chromatin, which sets in motion the specific targeting of nuclear pores to the nuclear surface.

Integrating Complex Functions: Coordination of Nuclear Pore Complex Assembly and Membrane Expansion of the Nuclear Envelope Requires a Family of Integral Membrane Proteins

Integrating Complex Functions: Coordination of Nuclear Pore Complex Assembly and Membrane Expansion of the Nuclear Envelope Requires a Family of Integral Membrane Proteins
Author:
Publisher:
Total Pages:
Release:
Genre:
ISBN:

The nuclear envelope harbors numerous large proteinaceous channels, the nuclear pore complexes (NPCs), through which macromolecular exchange between the cytosol and the nucleoplasm occurs. This double-membrane nuclear envelope is continuous with the endoplasmic reticulum and thus functionally connected to such diverse processes as vesicular transport, protein maturation and lipid synthesis. Recent results obtained from studies in Saccharomyces cerevisiae indicate that assembly of the nuclear pore complex is functionally dependent upon maintenance of lipid homeostasis of the ER membrane. Previous work from one of our laboratories has revealed that an integral membrane protein Apq12 is important for the assembly of functional nuclear pores. Cells lacking APQ12 are viable but cannot grow at low temperatures, have aberrant NPCs and a defect in mRNA export. Remarkably, these defects in NPC assembly can be overcome by supplementing cells with a membrane fluidizing agent, benzyl alcohol, suggesting that Apq12 impacts the flexibility of the nuclear membrane, possibly by adjusting its lipid composition when cells are shifted to a reduced temperature. Our new study now expands these findings and reveals that an essential membrane protein, Brr6, shares at least partially overlapping functions with Apq12 and is also required for assembly of functional NPCs. A third nuclear envelope membrane protein, Brl1, is related to Brr6, and is also required for NPC assembly. Because maintenance of membrane homeostasis is essential for cellular survival, the fact that these three proteins are conserved in fungi that undergo closed mitoses, but are not found in metazoans or plants, may indicate that their functions are performed by proteins unrelated at the primary sequence level to Brr6, Brl1 and Apq12 in cells that disassemble their nuclear envelopes during mitosis.

Nuclear Pore Complexes in Genome Organization, Function and Maintenance

Nuclear Pore Complexes in Genome Organization, Function and Maintenance
Author: Maximiliano D’Angelo
Publisher: Springer
Total Pages: 245
Release: 2018-02-02
Genre: Medical
ISBN: 331971614X

The three-dimensional organization of the DNA inside the eukaryotic cell nucleus has emerged a critical regulator of genome integrity and function. Increasing evidence indicates that nuclear pore complexes (NPCs), the large protein channels that connect the nucleus to the cytoplasm, play a critical role in the establishment and maintenance of chromatin organization and in the regulation of gene activity. These findings, which oppose the traditional view of NPCs as channels with only one: the facilitation of nucleocytoplasmic molecule exchange, have completely transformed our understanding of these structures. This book describes our current knowledge of the role of NPCs in genome organization and gene expression regulation. It starts by providing an overview of the different compartments and structures of the nucleus and how they contribute to organizing the genome, then moves to examine the direct roles of NPCs and their components in gene expression regulation in different organisms, and ends by describing the function of nuclear pores in the infection and genome integration of HIV, in DNA repair and telomere maintenance, and in the regulation of chromosome segregation and mitosis. This book provides an intellectual backdrop for anyone interested in understanding how the gatekeepers of the nucleus contribute to safeguarding the integrity and function of the eukaryotic genome.

Nuclear-Cytoplasmic Transport

Nuclear-Cytoplasmic Transport
Author: Weidong Yang
Publisher: Springer
Total Pages: 277
Release: 2018-07-27
Genre: Science
ISBN: 3319773097

Dysfunction of nuclear-cytoplasmic transport systems has been associated with many human diseases. Thus, understanding of how functional this transport system maintains, or through dysfunction fails to maintain remains the core question in cell biology. In eukaryotic cells, the nuclear envelope (NE) separates the genetic transcription in the nucleus from the translational machinery in the cytoplasm. Thousands of nuclear pore complexes (NPCs) embedded on the NE selectively mediate the bidirectional trafficking of macromolecules such as RNAs and proteins between these two cellular compartments. In this book, the authors integrate recent progress on the structure of NPC and the mechanism of nuclear-cytoplasmic transport system in vitro and in vivo.

The Nuclear Envelope

The Nuclear Envelope
Author: Sue Shackleton
Publisher: Humana
Total Pages: 0
Release: 2016-05-05
Genre: Science
ISBN: 9781493935284

This volume provides a wide range of protocols used in studying the nuclear envelope, with special attention to the experimental adjustments that may be required to successfully investigate this complex organelle in cells from various organisms. The Nuclear Envelope: Methods and Protocols is divided into five sections: Part I – Nuclear Envelope Isolation; Part II – Nuclear Envelope Protein Interactions, Localization, and Dynamics; Part III – Nuclear Envelope Interactions with the Cytoskeleton; Part IV – Nuclear Envelope-Chromatin Interactions; and Part V – Nucleo-Cytoplasmic Transport. Many of the modifications discussed in this book have only been circulated within laboratories that have conducted research in this field for many years. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls. Cutting edge and thorough, The Nuclear Envelope: Methods and Protocols is a timely resource for researchers who have joined this dynamic and rapidly growing field.