Statistical Physics Of Dna: An Introduction To Melting, Unzipping And Flexibility Of The Double Helix

Statistical Physics Of Dna: An Introduction To Melting, Unzipping And Flexibility Of The Double Helix
Author: Nikos Theodorakopoulos
Publisher: World Scientific
Total Pages: 196
Release: 2019-12-24
Genre: Science
ISBN: 9811209553

The stability of the DNA double helix is contingent on fine-tuning a number of physicochemical control parameters. Varying any one of them leads to separation of the two strands, in what constitutes a rare physical example of a thermodynamic phase transition in a one-dimensional system. The present book aims at providing a self-contained account of the statistical physics of cooperative processes in DNA, e.g. thermal and mechanical dissociation, force-induced melting, equilibria of hairpin-like secondary structures. In addition, the book presents some fundamental aspects of DNA elasticity, as observed in key experiments, old and new. The latter include some recently published scattering data on apparently soft, short DNA chains and their interpretation in terms of local structural defects (permanent bends, 'kinky DNA', after the original Crick-Klug hypothesis).The development of mathematical models used (Kratky-Porod polymer chain, Poland-Scheraga and Peyrard-Bishop-Dauxois models of DNA melting) emphasizes the use of realistic parameters and the relevance of practical numerical methods for comparing with experimental data. Accordingly, a large number of specially produced figures has been included.The presentation is at the level of an advanced undergraduate or introductory graduate course. An extra chapter provides the necessary mathematical background on elasticity of model polymer chains.

Statistical Physics of Macromolecules

Statistical Physics of Macromolecules
Author:
Publisher: Amer Inst of Physics
Total Pages: 350
Release: 1994
Genre: Science
ISBN: 1563960710

This text presents an introduction to the field of statistical physics of macromolecules, from the basic concepts to modern achievements. Applications in various fields of polymer physical chemistry and molecular biophysics are also covered, as are: the fundamentals of statistical theory of polymer solutions and melts; classical, sealing and renormalization group approaches; the main ideas of statistical theories of polymer liquid crystals, polymer networks and polyelectrolytes; dynamic viscoelastic behavior of polymer systems; models of house, Zimm and reptation concepts; and specific features of main biopolymers - DNA and proteins. This English edition also includes sections describing the most important recent advances such as: statistical theory of DNA gel-electrophoresis, polymers at interfaces, and dynamics of concentrated solutions of rigid polymers.

Statistical Mechanics

Statistical Mechanics
Author: James Sethna
Publisher: OUP Oxford
Total Pages: 374
Release: 2006-04-07
Genre: Science
ISBN: 0191566217

In each generation, scientists must redefine their fields: abstracting, simplifying and distilling the previous standard topics to make room for new advances and methods. Sethna's book takes this step for statistical mechanics - a field rooted in physics and chemistry whose ideas and methods are now central to information theory, complexity, and modern biology. Aimed at advanced undergraduates and early graduate students in all of these fields, Sethna limits his main presentation to the topics that future mathematicians and biologists, as well as physicists and chemists, will find fascinating and central to their work. The amazing breadth of the field is reflected in the author's large supply of carefully crafted exercises, each an introduction to a whole field of study: everything from chaos through information theory to life at the end of the universe.

Lectures On Statistical Physics And Protein Folding

Lectures On Statistical Physics And Protein Folding
Author: Kerson Huang
Publisher: World Scientific
Total Pages: 159
Release: 2005-05-30
Genre: Science
ISBN: 9814481068

This book introduces an approach to protein folding from the point of view of kinetic theory. There is an abundance of data on protein folding, but few proposals are available on the mechanism driving the process. Here, presented for the first time, are suggestions on possible research directions, as developed by the author in collaboration with C C Lin.The first half of this invaluable book contains a concise but relatively complete review of relevant topics in statistical mechanics and kinetic theory. It includes standard topics such as thermodynamics, the Maxwell-Boltzmann distribution, and ensemble theory. Special discussions include the dynamics of phase transitions, and Brownian motion as an illustration of stochastic processes.The second half develops topics in molecular biology and protein structure, with a view to discovering mechanisms underlying protein folding. Attention is focused on the energy flow through the protein in its folded state. A mathematical model, based on the Brownian motion of coupled harmonic oscillators, is worked out in the appendix.

New Trends in Statistical Physics

New Trends in Statistical Physics
Author: Alfredo MacĀ”as
Publisher: World Scientific
Total Pages: 373
Release: 2010
Genre: Science
ISBN: 981430753X

Prof Leopoldo Garcia-Colin will become 80 years old in 2010, therefore we are interested in the publication of a Festschrift (book) to honor him. Prof Garcia-Colin has worked in many different fields of statistical physics, and has applied it to biological physics, solid state physics, relativity and cosmology. We are planning a 500 pages book with original and peer-reviewed articles from his friends and former students. We may buy about 100 copies of it.

Nonlinear Physics of DNA

Nonlinear Physics of DNA
Author: Ludmila V. Yakushevich
Publisher: John Wiley & Sons
Total Pages: 205
Release: 2006-01-24
Genre: Science
ISBN: 3527604731

The first edition of this book was the first on the physics of DNA to go beyond the simple (simplified) 'linear' approach, and it has since been found that the inclusion of nonlinear effects leads to a significantly improved interpretation of experimental data. This new edition naturally retains this approach, but has been completely revised, updated and expanded to cover recent developments. Beginning with introductory chapters on DNA structure and dynamics, the book also includes a comparison between linear and nonlinear approaches to the DNA molecule, a chapter devoted to the statistics of nonlinear excitations of DNA, and examples for the interpretation of experimental data on the dynamics of DNA in terms of nonlinear theory. Essential reading for researchers in biophysics and nonlinear physics, allowing biologists, chemists and physicists to continue developing new and improved techniques of investigating the DNA molecule.

Physics in Molecular Biology

Physics in Molecular Biology
Author: Kim Sneppen
Publisher: Cambridge University Press
Total Pages: 328
Release: 2005-08-25
Genre: Science
ISBN: 9780521844192

This book, first published in 2005, is a discussion for advanced physics students of how to use physics to model biological systems.

Computational Biology

Computational Biology
Author: Ralf Blossey
Publisher: CRC Press
Total Pages: 276
Release: 2006-05-25
Genre: Computers
ISBN: 1420010786

Quantitative methods have a particular knack for improving any field they touch. For biology, computational techniques have led to enormous strides in our understanding of biological systems, but there is still vast territory to cover. Statistical physics especially holds great potential for elucidating the structural-functional relationships in bi

Statistical Physics

Statistical Physics
Author: A. Isihara
Publisher: Academic Press
Total Pages: 455
Release: 2013-09-11
Genre: Science
ISBN: 1483274101

Statistical Physics provides an introduction to the basic principles of statistical mechanics. Statistical mechanics is one of the fundamental branches of theoretical physics and chemistry, and deals with many systems such as gases, liquids, solids, and even molecules which have many atoms. The book consists of three parts. Part I gives the principles, with elementary applications to noninteracting systems. It begins with kinetic theory and discusses classical and quantum systems in equilibrium and nonequilibrium. In Part II, classical statistical mechanics is developed for interacting systems in equilibrium and nonequilibrium. Finally, in Part III, quantum statistics is presented to an extent which enables the reader to proceed to advanced many-body theories. This book is written for a one-year graduate course in statistical mechanics or a half-year course followed by a half-year course on related subjects, such as special topics and applications or elementary many-body theories. Efforts are made such that discussions of each subject start with an elementary level and end at an advanced level.