Plant Genomes

Plant Genomes
Author: Jean-Nicolas Volff
Publisher: Karger Medical and Scientific Publishers
Total Pages: 155
Release: 2008-01-01
Genre: Medical
ISBN: 3805584911

Recent major advances in the field of comparative genomics and cytogenomics of plants, particularly associated with the completion of ambitious genome projects, have uncovered astonishing facets of the architecture and evolutionary history of plant genomes. The aim of this book was to review these recent developments as well as their implications in our understanding of the mechanisms which drive plant diversity. New insights into the evolution of gene functions, gene families and genome size are presented, with particular emphasis on the evolutionary impact of polyploidization and transposable elements. Knowledge on the structure and evolution of plant sex chromosomes, centromeres and microRNAs is reviewed and updated. Taken together, the contributions by internationally recognized experts present a panoramic overview of the structural features and evolutionary dynamics of plant genomes.This volume of Genome Dynamics will provide researchers, teachers and students in the fields of biology and agronomy with a valuable source of current knowledge on plant genomes.

Plant Lipid Metabolism

Plant Lipid Metabolism
Author: J.C. Kader
Publisher: Springer Science & Business Media
Total Pages: 598
Release: 2013-04-18
Genre: Science
ISBN: 9401583943

A collection of papers that comprehensively describe the major areas of research on lipid metabolism of plants. State-of-the-art knowledge about research on fatty acid and glycerolipid biosynthesis, isoprenoid metabolism, membrane structure and organization, lipid oxidation and degradation, lipids as intracellular and extracellular messengers, lipids and environment, oil seeds and gene technology is reviewed. The different topics covered show that modern tools of plant cellular and molecular biology, as well as molecular genetics, have been recently used to characterize several key enzymes of plant lipid metabolism (in particular, desaturases, thioesterases, fatty acid synthetase) and to isolate corresponding cDNAs and genomic clones, allowing the use of genetic engineering methods to modify the composition of membranes or storage lipids. These findings open fascinating perspectives, both for establishing the roles of lipids in membrane function and intracellular signalling and for adapting the composition of seed oil to the industrial needs. This book will be a good reference source for research scientists, advanced students and industrialists wishing to follow the considerable progress made in recent years on plant lipid metabolism and to envision the new opportunities offered by genetic engineering for the development of novel oil seeds.

A Broader View for Plant EvoDevo: Novel Approaches for Diverse Model Systems

A Broader View for Plant EvoDevo: Novel Approaches for Diverse Model Systems
Author: Verónica S. Di Stilio
Publisher: Frontiers Media SA
Total Pages: 186
Release: 2017-05-11
Genre:
ISBN: 2889451534

This collection attempts to integrate work pertaining to a fundamental question in plant evolution: What are the molecular underpinnings for the origin of different plant forms? Among the many facets this question touches are the transition to land, the emergence of vascular plants, the origin of the seed and the origin and diversification of floral form. We aim to bring to the forefront the most salient and original plant systems and approaches within an inclusive phylogenetic context that encompasses representatives of the major lineages of land plants.

Plant ABC Transporters

Plant ABC Transporters
Author: Markus Geisler
Publisher: Springer
Total Pages: 333
Release: 2014-09-06
Genre: Science
ISBN: 3319065114

This book is devoted to the fascinating superfamily of plant ATP-binding cassette (ABC) transporters and their variety of transported substrates. It highlights their exciting biological functions, covering aspects ranging from cellular detoxification, through development, to symbiosis and defense. Moreover, it also includes a number of chapters that center on ABC transporters from non-Arabidopsis species. ABC proteins are ubiquitous, membrane-intrinsic transporters that catalyze the primary (ATP-dependent) movement of their substrates through biological membranes. Initially identified as an essential aspect of a vacuolar detoxification process, genetic work in the last decade has revealed an unexpectedly diverse variety of ABC transporter substrates, which include not only xenobiotic conjugates, but also heavy metals, lipids, terpenoids, lignols, alkaloids and organic acids. The discovery that members of the ABCB and ABCG family are involved in the movement of phytohormones has further sparked their exploration and provided a new understanding of the whole family. Accordingly, the trafficking, regulation and structure-function of ABCB-type auxin transporters are especially emphasized in this book.

Yeast Systems Biology

Yeast Systems Biology
Author: Juan I. Castrillo
Publisher: Humana Press
Total Pages: 0
Release: 2011-08-23
Genre: Science
ISBN: 9781617791727

Systems Biology aims at deciphering the genotype-phenotype relationships at the levels of genes, transcripts (RNAs), peptides, proteins, metabolites, and environmental factors participating in complex cellular networks in order to reveal the mechanisms and principles governing the behavior of complex biological systems. Yeast Systems Biology: Methods and Protocols presents an up-to-date view of the optimal characteristics of the yeast Saccharomyces cerevisiae as a model eukaryote, perspective on the latest experimental and computational techniques for systems biology studies, most of which were first designed for and validated in yeast, and selected examples of yeast systems biology studies and their applications in biotechnology and medicine. These experiments under controlled conditions can uncover the complexity and interplay of biological networks with their dynamics, basic principles of internal organization, and balanced orchestrated functions between organelles in direct interaction with the environment as well as the characterization of short and long-term effects of perturbations and dysregulation of networks that may illuminate the origin of complex human diseases. Written for the highly successful Methods in Molecular BiologyTM series, this volume contains the kind of detailed description and implementation advice that is crucial for getting optimal results. Practical and cutting-edge, Yeast Systems Biology: Methods and Protocols serves researchers interested in comprehensive systems biology strategies in well-defined model systems with specific objectives as well as a better knowledge of the latest post-genomic strategies at all ‘omic levels and computational approaches towards analysis, integration, and modeling of biological systems, from single-celled organisms to higher eukaryotes.

Abscisic Acid in Plants

Abscisic Acid in Plants
Author:
Publisher: Academic Press
Total Pages: 386
Release: 2019-11-21
Genre: Science
ISBN: 0081026218

Abscisic Acid in Plants, Volume 92, the latest release in the Advances in Botanical Research series, is a compilation of the current state-of-the-art on the topic. Chapters in this new release comprehensively describe latest knowledge on how ABA functions as a plant hormone. They cover topics related to molecular mechanisms as well as the biochemical and chemical aspects of ABA action: hormone biosynthesis, catabolism, transport, perception, signaling in plants, seeds and in response to biotic and abiotic stresses, hormone evolution and chemical biology, and much more. - Presents the latest release in the Advances in Botanical Research series - Provides an Ideal resource for post-graduates and researchers in the plant sciences, including plant physiology, plant genetics, plant biochemistry, plant pathology, and plant evolution - Contains contributions from internationally recognized authorities in their respective fields

Genome Duplication

Genome Duplication
Author: Melvin DePamphilis
Publisher: Garland Science
Total Pages: 476
Release: 2010-10-06
Genre: Science
ISBN: 1136738231

Genome Duplication provides a comprehensive and readable overview of the underlying principles that govern genome duplication in all forms of life, from the simplest cell to the most complex multicellular organism. Using examples from the three domains of life - bacteria, archaea, and eukarya - Genome Duplication shows how all living organisms store their genome as DNA and how they all use the same evolutionary-conserved mechanism to duplicate it: semi-conservative DNA replication by the replication fork. The text shows how the replication fork determines where organisms begin genome duplication, how they produce a complete copy of their genome each time a cell divides, and how they link genome duplication to cell division. Genome Duplication explains how mistakes in genome duplication are associated with genetic disorders and cancer, and how understanding genome duplication, its regulation, and how the mechanisms differ between different forms of life, is critical to the understanding and treatment of human disease.

Ornamental Crops

Ornamental Crops
Author: Johan Van Huylenbroeck
Publisher: Springer
Total Pages: 888
Release: 2018-07-25
Genre: Science
ISBN: 3319906984

Ornamental plants are economically important worldwide. Both growers and consumers ask continuously for new, improved varieties. Although there are numerous ornamental species, ornamental plant breeding and plant breeding research is mainly limited to some major species. This book focuses on the recent advances and achievements in ornamental plant breeding. The first part of the book focuses on plant traits and breeding techniques that are typical for ornamental plants. Eminent research groups write these general chapters. For plant traits like flower colour or shape, breeding for disease resistance and vase or shelf life are reviewed. General technical plant breeding chapters deal with mutation breeding, polyploidisation, in vitro breeding techniques and new developments in molecular techniques. The second part of the book consists of crop-specific chapters. Here all economically major ornamental species are handled together with selected representative species from different plant groups (cut flowers, pot plants, woody ornamental plants). In these crop-specific chapters, the main focus is on recent scientific achievements over the last decade.

Horticultural Reviews, Volume 27

Horticultural Reviews, Volume 27
Author: Jules Janick
Publisher: John Wiley & Sons
Total Pages: 400
Release: 2002-04-08
Genre: Science
ISBN: 047121700X

Horticultural Reviews is an ongoing series presenting state-of-the-art review articles on research in the production of commercial horticultural crops: vegetables, fruits, nuts, and ornamental plants of commercial importance. Articles perform the valuable function of collecting, comparing, and contrasting the primary journal literature in order to form an overview of the topic. This detailed analysis bridges the gap between the specialized researcher and the broader community of horticultural scientists.

Transitivity Clustering

Transitivity Clustering
Author: Tobias Wittkop
Publisher: Sudwestdeutscher Verlag Fur Hochschulschriften AG
Total Pages: 148
Release: 2010-05
Genre:
ISBN: 9783838116549

Clustering is a computational technique for the assignment of objects into groups of similar elements. Generally, it is widely used for business data interpretation, natural language analyses, and image processing. Typical bioinformatic applications are the detection of homologous proteins and the identification of co-expressed genes. Here, we introduce Transitivity Clustering and its accompanying software framework TransClust, a homogeneous data partitioning method based on Weighted Transitive Graph Projection. It aims for unraveling hidden transitive substructures in a given similarity graph deduced from a pairwise similarity measure. Transitivity Clustering is an efficient technique that is capable of processing hundreds of thousands of data points while still being robust against outliers and noise. A single, intuitive density parameter determines the number and the size of the clusters; with provable attributes. In addition, we present extensions of the underlying graph model in order to create hierarchies and overlaps, as well as comparisons against alternative clustering approaches and real-world application cases.