Planctomycetes-Verrucomicrobia-Chlamydiae Bacterial Superphylum: New Model Organisms for Evolutionary Cell Biology, 2nd Edition

Planctomycetes-Verrucomicrobia-Chlamydiae Bacterial Superphylum: New Model Organisms for Evolutionary Cell Biology, 2nd Edition
Author: Laura van Niftrik
Publisher: Frontiers Media SA
Total Pages: 170
Release: 2019-10-02
Genre:
ISBN: 2889459748

The Planctomycetes, Verrucomicrobia, Chlamydiae (PVC) and related phyla have recently emerged as fascinating subjects for research in evolutionary cell biology, ecology, biotechnology, evolution and human health. This interest is prompted by particular characteristics observed in the PVC superphylum that are otherwise rarely observed in bacteria but are however still poorly described or understood, such as the presence of a complex endomembrane system, or compacted DNA throughout most of the cell cycle. Therefore, the members of the PVC superphylum represent an excellent example of the value of studying bacteria other than ‘classical’ models.

Planctomycetes: Cell Structure, Origins and Biology

Planctomycetes: Cell Structure, Origins and Biology
Author: John A. Fuerst
Publisher: Springer Science & Business Media
Total Pages: 290
Release: 2013-07-20
Genre: Science
ISBN: 1627035028

This book introduces Planctomycetes bacteria and deals in detail with their unusual structure, physiology, genomics and evolutionary significance. It is a definitive summary of recent knowledge of this important distinctive group of bacteria, microorganisms which challenge our very concept of the bacterium. Planctomycetes, and their relatives within the PVC superphylum of domain Bacteria, including verrucomicrobia and chlamydia, challenge our classical concept of the bacterium and its modes of life and provide new experimental models for exploring evolutionary cell biology and the full diversity of how living cells can be organized internally. Unique among bacteria, they include species possessing cells with intracellular membrane-bounded compartments and a peptidoglycan-less cell wall, and bacteria such as the anammox organisms performing unique anaerobic ammonium oxidation significant for global nitrogen cycle.

Bergey's Manual of Systematic Bacteriology

Bergey's Manual of Systematic Bacteriology
Author: David R. Boone
Publisher: Springer Science & Business Media
Total Pages: 717
Release: 2012-01-13
Genre: Science
ISBN: 038721609X

Bacteriologists from all levels of expertise and within all specialties rely on this Manual as one of the most comprehensive and authoritative works. Since publication of the first edition of the Systematics, the field has undergone revolutionary changes, leading to a phylogenetic classification of prokaryotes based on sequencing of the small ribosomal subunit. The list of validly named species has more than doubled since publication of the first edition, and descriptions of over 2000 new and realigned species are included in this new edition along with more in-depth ecological information about individual taxa and extensive introductory essays by leading authorities in the field.

Membrane Bioenergetics

Membrane Bioenergetics
Author: Vladimir P. Skulachev
Publisher: Springer Science & Business Media
Total Pages: 453
Release: 2013-11-11
Genre: Science
ISBN: 3642729789

Membrane bioenergetics is one of the most rapidly growing areas within physico-chemical biology. Main aspects treated in this book include energy conservation and utilization by membrane-linked molecular mechanisms such as intracellular respiration, photosynthesis, transport phenomena, rotation of bacterial flagella, and the regulation of heat production.

Prokaryotic Cytoskeletons

Prokaryotic Cytoskeletons
Author: Jan Löwe
Publisher: Springer
Total Pages: 457
Release: 2017-05-11
Genre: Science
ISBN: 331953047X

This book describes the structures and functions of active protein filaments, found in bacteria and archaea, and now known to perform crucial roles in cell division and intra-cellular motility, as well as being essential for controlling cell shape and growth. These roles are possible because the cytoskeletal and cytomotive filaments provide long range order from small subunits. Studies of these filaments are therefore of central importance to understanding prokaryotic cell biology. The wide variation in subunit and polymer structure and its relationship with the range of functions also provide important insights into cell evolution, including the emergence of eukaryotic cells. Individual chapters, written by leading researchers, review the great advances made in the past 20-25 years, and still ongoing, to discover the architectures, dynamics and roles of filaments found in relevant model organisms. Others describe one of the families of dynamic filaments found in many species. The most common types of filament are deeply related to eukaryotic cytoskeletal proteins, notably actin and tubulin that polymerise and depolymerise under the control of nucleotide hydrolysis. Related systems are found to perform a variety of roles, depending on the organisms. Surprisingly, prokaryotes all lack the molecular motors associated with eukaryotic F-actin and microtubules. Archaea, but not bacteria, also have active filaments related to the eukaryotic ESCRT system. Non-dynamic fibres, including intermediate filament-like structures, are known to occur in some bacteria.. Details of known filament structures are discussed and related to what has been established about their molecular mechanisms, including current controversies. The final chapter covers the use of some of these dynamic filaments in Systems Biology research. The level of information in all chapters is suitable both for active researchers and for advanced students in courses involving bacterial or archaeal physiology, molecular microbiology, structural cell biology, molecular motility or evolution. Chapter 3 of this book is open access under a CC BY 4.0 license.

The Prokaryotes

The Prokaryotes
Author: Edward F. DeLong
Publisher: Springer
Total Pages: 567
Release: 2014-10-13
Genre: Science
ISBN: 9783642301193

The Prokaryotes is a comprehensive, multi-authored, peer reviewed reference work on Bacteria and Achaea. This fourth edition of The Prokaryotes is organized to cover all taxonomic diversity, using the family level to delineate chapters. Different from other resources, this new Springer product includes not only taxonomy, but also prokaryotic biology and technology of taxa in a broad context. Technological aspects highlight the usefulness of prokaryotes in processes and products, including biocontrol agents and as genetics tools. The content of the expanded fourth edition is divided into two parts: Part 1 contains review chapters dealing with the most important general concepts in molecular, applied and general prokaryote biology; Part 2 describes the known properties of specific taxonomic groups. Two completely new sections have been added to Part 1: bacterial communities and human bacteriology. The bacterial communities section reflects the growing realization that studies on pure cultures of bacteria have led to an incomplete picture of the microbial world for two fundamental reasons: the vast majority of bacteria in soil, water and associated with biological tissues are currently not culturable, and that an understanding of microbial ecology requires knowledge on how different bacterial species interact with each other in their natural environment. The new section on human microbiology deals with bacteria associated with healthy humans and bacterial pathogenesis. Each of the major human diseases caused by bacteria is reviewed, from identifying the pathogens by classical clinical and non-culturing techniques to the biochemical mechanisms of the disease process. The 4th edition of The Prokaryotes is the most complete resource on the biology of prokaryotes. The following volumes are published consecutively within the 4th Edition: Prokaryotic Biology and Symbiotic Associations Prokaryotic Communities and Ecophysiology Prokaryotic Physiology and Biochemistry Applied Bacteriology and Biotechnology Human Microbiology Actinobacteria Firmicutes Alphaproteobacteria and Betaproteobacteria Gammaproteobacteria Deltaproteobacteria and Epsilonproteobacteria Other Major Lineages of Bacteria and the Archaea

Disturbance Effects on Soil Carbon and Greenhouse Gas Emissions in Forest Ecosystems

Disturbance Effects on Soil Carbon and Greenhouse Gas Emissions in Forest Ecosystems
Author: Scott X. Chang
Publisher: MDPI
Total Pages: 232
Release: 2020-05-23
Genre: Science
ISBN: 3039286668

Forest ecosystems are often disturbed by agents such as harvesting, fire, wind, insects and diseases, and acid deposition, with differing intensities and frequencies. Such disturbances can markedly affect the amount, form, and stability of soil organic carbon in, and the emission of greenhouse gases, including CO2, CH4, and N2O from, forest ecosystems. It is vitally important that we improve our understanding of the impact of different disturbance regimes on forest soil carbon dynamics and greenhouse gas emissions to guide our future research, forest management practices, and policy development. This Special Issue provides an important update on the disturbance effects on soil carbon and greenhouse gas emissions in forest ecosystems in different climate regions.

Environmental Microbiology: Fundamentals and Applications

Environmental Microbiology: Fundamentals and Applications
Author: Jean-Claude Bertrand
Publisher: Springer
Total Pages: 933
Release: 2015-01-26
Genre: Science
ISBN: 940179118X

This book is a treatise on microbial ecology that covers traditional and cutting-edge issues in the ecology of microbes in the biosphere. It emphasizes on study tools, microbial taxonomy and the fundamentals of microbial activities and interactions within their communities and environment as well as on the related food web dynamics and biogeochemical cycling. The work exceeds the traditional domain of microbial ecology by revisiting the evolution of cellular prokaryotes and eukaryotes and stressing the general principles of ecology. The overview of the topics, authored by more than 80 specialists, is one of the broadest in the field of environmental microbiology. The overview of the topics, authored by more than 80 specialists, is one of the broadest in the field of environmental microbiology.

Microbial Evolution

Microbial Evolution
Author: Howard Ochman
Publisher:
Total Pages: 0
Release: 2016
Genre: Science
ISBN: 9781621820376

Bacteria have been the dominant forms of life on Earth for the past 3.5 billion years. They rapidly evolve, constantly changing their genetic architecture through horizontal DNA transfer and other mechanisms. Consequently, it can be difficult to define individual species and determine how they are related. Written and edited by experts in the field, this collection from Cold Spring Harbor Perspectives in Biology examines how bacteria and other microbes evolve, focusing on insights from genomics-based studies. Contributors discuss the origins of new microbial populations, the evolutionary and ecological mechanisms that keep species separate once they have diverged, and the challenges of constructing phylogenetic trees that accurately reflect their relationships. They describe the organization of microbial genomes, the various mutations that occur, including the birth of new genes de novo and by duplication, and how natural selection acts on those changes. The role of horizontal gene transfer as a strong driver of microbial evolution is emphasized throughout. The authors also explore the geologic evidence for early microbial evolution and describe the use of microbial evolution experiments to examine phenomena like natural selection. This volume will thus be essential reading for all microbial ecologists, population geneticists, and evolutionary biologists.