Microbial Diversity in the Genomic Era

Microbial Diversity in the Genomic Era
Author: Surajit Das
Publisher: Academic Press
Total Pages: 715
Release: 2018-09-20
Genre: Science
ISBN: 0128148500

Microbial Diversity in the Genomic Era presents insights on the techniques used for microbial taxonomy and phylogeny, along with their applications and respective pros and cons. Though many advanced techniques for the identification of any unknown bacterium are available in the genomics era, a far fewer number of the total microbial species have been discovered and identified to date. The assessment of microbial taxonomy and biosystematics techniques discovered and practiced in the current genomics era with suitable recommendations is the prime focus of this book. Discusses the techniques used for microbial taxonomy and phylogeny with their applications and respective pros and cons Reviews the evolving field of bacterial typing and the genomic technologies that enable comparative analysis of multiple genomes and the metagenomes of complex microbial environments Provides a uniform, standard methodology for species designation

Genomics of Plant-Associated Bacteria

Genomics of Plant-Associated Bacteria
Author: Dennis C. Gross
Publisher: Springer
Total Pages: 283
Release: 2014-06-16
Genre: Science
ISBN: 3642553788

This book describes how genomics has revolutionized our scientific understanding of agriculturally important plant-associated bacteria. Each chapter focuses on the genomics of particular bacteria: the first described plant pathogen, Erwinia amylovora; phytoplasmas lacking cell walls; fastidious, phloem-restricted liberibacters; Pseudomonas syringae, which is a genetically tractable model system; Xanthomonas citri, which causes a disease that can devastate citrus crops and Pseudomonas fluorescens, which can protect plants from diseases. Topics considered in this volume include the importance of horizontal gene transfer in originating new bacterial strains and species and advances in transcriptomics that allow us to describe the complex regulatory networks critical to plant-microbe interactions. The availability of the Xanthomonas oryzae genome has led to new technologies in genome editing, which will revolutionize approaches to genetic engineering, even in eukaryotes. The contributions show how genomics has greatly accelerated progress toward understanding the biology of these bacteria and how that understanding can be translated into novel crop protection methods.

Plant Microbiome: Stress Response

Plant Microbiome: Stress Response
Author: Dilfuza Egamberdieva
Publisher: Springer
Total Pages: 389
Release: 2018-02-06
Genre: Technology & Engineering
ISBN: 9811055149

This book presents state-of-the-art research on the many facets of the plant microbiome, including diversity, ecology, physiology and genomics, as well as molecular mechanisms of plant-microbe interactions. Topics considered include the importance of microbial secondary metabolites in stimulating plant growth, induced systemic resistance, tolerance to abiotic stress, and biological control of plant pathogens. The respective contributions show how microbes help plants to cope with abiotic stresses, and represent significant progress toward understanding the complex regulatory networks critical to host-microbe interaction and plant adaptation in extreme environments. New insights into the mechanisms of microbial actions in inducing plant stress tolerance open new doors for improving the efficacy of microbial strategies, and could produce new ways of economically increasing crop yields without harming the environment. As such, this book offers an essential resource for students and researchers with an interest in plant-microbe interaction, as well as several possibilities for employing the plant microbiome in the enhancement of crop productivity under future climate change scenarios.

Genomics of Plant-Associated Fungi and Oomycetes: Dicot Pathogens

Genomics of Plant-Associated Fungi and Oomycetes: Dicot Pathogens
Author: Ralph A. Dean
Publisher: Springer
Total Pages: 244
Release: 2014-08-22
Genre: Science
ISBN: 3662440563

This book describes how genomics has revolutionized our understanding of agriculturally important plant-associated fungi and oomycetes. It illustrates some fundamental discoveries about these eukaryotic microbes with regard to the overall structure of their genomes, their lifestyles and the molecular mechanisms that form the basis of their interactions with plants. Genomics has provided new insights into fungal lifestyles and led to practical advances in plant breeding and crop protection, such as predictions about the spread and evolution of new pathogens. This volume focuses on fungi and oomycetes that are typical dicot plant pathogens and includes: Sclerotinia sclerotiorum, Botrytis cinerea, Alternaria sp.,Verticillium alfalfae and Verticillium dahliae, Fusarium oxysporum, Phytophthora capsici, Phytophthora sojae, Phytophthora ramorum, Phytophthora infestans, Hyaloperonospora arabidopsidis.

Genomics of Plant-Associated Fungi: Monocot Pathogens

Genomics of Plant-Associated Fungi: Monocot Pathogens
Author: Ralph A. Dean
Publisher: Springer
Total Pages: 206
Release: 2014-08-23
Genre: Science
ISBN: 3662440539

This book describes how genomics has revolutionized our understanding of agriculturally important plant-associated fungi. It illustrates some fundamental discoveries about these eukaryotic microbes with regard to the overall structure of their genomes, their lifestyles and the molecular mechanisms that form the basis of their interactions with plants. Genomics has provided new insights into fungal lifestyles and led to practical advances in plant breeding and crop protection, such as predictions about the spread and evolution of new pathogens. This volume focuses on fungi that are important cereal and other monocot plant pathogens and includes: Pyrenophora tritici-repentis, Cochliobolus sp., Colletotrichum sp., Fusarium graminearum, Mycosphaerella graminicola and Mycosphaerella fijiensis, Magnaporthe oryzae, Blumeria graminis and Puccinia graminis.

Plant Microbe Interface

Plant Microbe Interface
Author: Ajit Varma
Publisher: Springer
Total Pages: 415
Release: 2019-08-02
Genre: Science
ISBN: 3030198316

This book shares the latest insights into the genetic basis of molecular communication between plants and their microbial consortia. Further, the book highlights the capabilities of the rhizosphere and endosphere, which help manage ecosystem responses to climate change, nutrient cycling and sequestration of carbon; and discusses their application to the development and management of renewable energy sources. In their natural environments, plants are surrounded by a tremendous number of microorganisms. Some microbes directly interact with plants in a mutually beneficial fashion, while others colonize plants solely for their own advantage. In addition, microbes can indirectly affect plants by drastically altering their environments. Understanding the complex nature of the plant-microbe interface (PMI) can pave the way for novel strategies to improve plant productivity in an eco-friendly manner. The PMI approach focuses on understanding the physical, molecular, and chemical interactions between organisms in order to determine their functional roles in biological, physical, chemical and environmental systems. Although several metabolites from plants and microbes have now been fully characterized, their roles in chemical interactions between these associates remain poorly understood, and require further investigation.

Molecular Mechanisms of Plant and Microbe Coexistence

Molecular Mechanisms of Plant and Microbe Coexistence
Author: Chandra Shekhar Nautiyal
Publisher: Springer Science & Business Media
Total Pages: 491
Release: 2008-07-10
Genre: Science
ISBN: 3540755756

Molecular Mechanisms of Plant and Microbe Coexistence presents studies on the complex and manifold interactions of plants and microbes at the population, genomics and proteomics level. The role of soil microbial diversity in enhancing plant health and plant microbe beneficial symbioses is discussed. Microbial communities are shown in the light of evolution. Main topics include genome coexistence and the functional genomics and proteomics of plant-associated microbes, which could form the basis for new environmentally benign strategies to combat infectious plant diseases and regulate plant growth. Further chapters focus on the role of signaling during the different stages of plant microbe coexistence, in symbiotic or pathogenic relationships, in quorum sensing and plant viral infections. Methods for studying the interactions in the root zone complement the book, which will certainly be of relevance in the practical application to agriculture, food security and for maintaining the balance of our ecosystems.

Plant-Microbe Dynamics

Plant-Microbe Dynamics
Author: Tanveer Bilal Pirzadah
Publisher: CRC Press
Total Pages: 268
Release: 2021-06-07
Genre: Science
ISBN: 1000388913

Plants and microbes have co-evolved and interacted with each other in nature. Understanding the complex nature of the plant-microbe interface can pave the way for novel strategies to improve plant productivity in an eco-friendly manner. The microbes associated with plants, often called plant microbiota, are an integral part of plant life. The significance of the plant microbiome is a reliable approach toward sustainability to meet future food crises and rejuvenate soil health. Profiling plant-associate microbiomes (genome assemblies of all microbes) is an emerging concept in understanding plant-microbe interactions. Microbiota extends the plant capacity to acclimatize fluctuating environmental conditions through several mechanisms. Thus, unraveling the mystery of plant-microbe dynamics through latest technologies to better understand the role of metabolites and signal pathway mechanisms is very important. This book shares the latest insight on omics technologies to unravel plant-microbe dynamic interactions and other novel phytotechnologies for cleaning contaminated soils. Besides, it also provides brief insight on the recently discovered clustered regularly interspaced short palindromic repeats CRISPR-Cas9, which is a genome editing tool to explore plant-microbe interactions and how this genome editing tool helps to improve the ability of microbes/plants to combat abiotic/biotic stresses.

Microbial Diversity and Ecology in Hotspots

Microbial Diversity and Ecology in Hotspots
Author: Aparna Gunjal
Publisher: Academic Press
Total Pages: 394
Release: 2021-11-26
Genre: Science
ISBN: 0323901492

Microbial Diversity in Hotspots provides an introduction to microbial diversity and microbes in different hotspots and threatened areas. The book gives insights on extremophiles, phyllosphere and rhizosphere, covers fungal diversity, conservation and microbial association, focuses on biodiversity acts and policies, and includes cases studies. Microbes explored are from the coldest to the hottest areas of the world. Although hotspots are zones with extremely high microbiology activities, the knowledge of microbial diversity from these areas is very limited, hence this is a welcome addition to existing resources. Provides an introduction to microbial biotechnology Addresses novel approaches to the study of microbial diversity in hotspots Provides the basics, along with advanced information on microbial diversity Discusses the techniques used to examine microbial diversity with their applications and respective pros and cons for sustainability Explores the importance of microbial genomes studies in commercial applications