Identification and Characterization of Late Blight Resistance Genes in Potato

Identification and Characterization of Late Blight Resistance Genes in Potato
Author: Sripad Joshi
Publisher:
Total Pages:
Release: 2021
Genre:
ISBN:

"Potato (Solanum tuberosum) is one of the major non-cereal staple food crops grown across the world. Canada produces 4.4 million tonnes of potato. The major constraints in potato production are the biotic and abiotic stresses. Among the biotic stresses, late blight of potato is one of the destructive diseases, caused by an oomycete, Phytophthora infestans. Late blight of potato causes up to 40% yield loss worldwide. Resistance to late blight is either qualitative or quantitative. Even though quantitative resistance is durable, the genetic bed rock underlying resistance is not well deciphered, which limits its applications. The objective of this study was to identify the resistance genes and their mechanisms, in a resistant genotype (Libertas) and a commercial susceptible genotype (AG704). The first study aimed at transcriptomics and metabolomics to identify the induced resistance related metabolites and genes, including the large impact transcription factors which regulate these genes and metabolites that are in higher fold change in a resistant genotype than in a susceptible genotype. A total of 160 induced metabolites and 611 induced genes were identified. A Transcription Factor (TF) enrichment study identified a total of 134 regulatory TFs, which were highly enriched in the promoters of induced genes. A correlation study among the induced genes further mapped several primary and secondary TFs. Among these bHLH66, MYB61, NAC56, WRKY51, MYB like, ERF RAP2-3 and MADS-box AGL15 had regulating sites in more than 208 downstream genes, of which many were secondary TFs. Hence, a two-tier transcriptional regulation of defense response genes was mapped. The metabolic profiling identified Hydroxycinnamic acid amides (HCAAs). Feruloylagmatine was highly accumulated in the resistant genotype post pathogen inoculation. Two major genes StACT1 and StACT2 which might be responsible were characterized by gene sequencing, qPCR and in silico protein docking data and it revealed the StACT2 gene to be mainly responsible for feruloylagmatine accumulation in potato. We found a NAC TF regulating StACT2 promoter region and it was identified as NAC72, which was accumulated more in the resistant than in the susceptible genotype. When the NAC72 CDS and promoter regions were sequenced a mutation was found in the promoter of NAC72. This gene was edited in a late blight susceptible commercial genotype, AG704, to enhance resistance. The expressions of genes StACT2 and NAC72 were significantly increased, however, the disease severity showed no significant difference. It is possible that there may be a missing chain in the hierarchy of genes involved in the regulation and/or in the metabolic pathway network to synthesize the metabolite feruloylagmatine, which is known to enhance disease resistance through deposition of these metabolites to reinforce the secondary cell walls, thus containing the pathogen to initial infection area. Discovery and editing of other mutated gene(s) should enhance feruloylagmatine production, as in resistant genotype. The other genes identified here also can be used in future for genome editing to increase RR metabolite accumulation in potato to enhance late blight and other disease resistance in potato"--

The Potato Genome

The Potato Genome
Author: Swarup Kumar Chakrabarti
Publisher: Springer
Total Pages: 332
Release: 2017-12-26
Genre: Science
ISBN: 3319661353

This book describes the historical importance of potato (Solanum tuberosum L.),potato genetic resources and stocks (including S. tuberosum group Phureja DM1-3 516 R44, a unique doubled monoploid homozygous line) used for potato genome sequencing. It also discusses strategies and tools for high-throughput sequencing, sequence assembly, annotation, analysis, repetitive sequences and genotyping-by-sequencing approaches. Potato (Solanum tuberosum L.; 2n = 4x = 48) is the fourth most important food crop of the world after rice, wheat and maize and holds great potential to ensure both food and nutritional security. It is an autotetraploid crop with complex genetics, acute inbreeding depression and a highly heterozygous nature. Further, the book examines the recent discovery of whole genome sequencing of a few wild potato species genomes, genomics in management and genetic enhancement of Solanum species, new strategies towards durable potato late blight resistance, structural analysis of resistance genes, genomics resources for abiotic stress management, as well as somatic cell genetics and modern approaches in true-potato-seed technology. The complete genome sequence provides a better understanding of potato biology, underpinning evolutionary process, genetics, breeding and molecular efforts to improve various important traits involved in potato growth and development.

Potato Genetics

Potato Genetics
Author: J. E. Bradshaw
Publisher: Cabi
Total Pages: 584
Release: 1994
Genre: Gardening
ISBN:

Origins, species and cytology. Theory and methods of genetical analysis. Cellular and molecular genetics. Environmental stress, morphology and quality. Inheritance of resistance to pests and diseases. Potato breeding.

Translational Genomics for Crop Breeding, Volume 1

Translational Genomics for Crop Breeding, Volume 1
Author: Rajeev Varshney
Publisher: John Wiley & Sons
Total Pages: 384
Release: 2013-09-13
Genre: Science
ISBN: 1118728327

Genomic Applications for Crop Breeding: Biotic Stress is the first of two volumes looking at the latest advances in genomic applications to crop breeding. This volume focuses on genomic-assisted advances for improving economically important crops against biotic stressors, such as viruses, fungi, nematodes, and bacteria. Looking at key advances in crops such as rice, barley, wheat, and potato amongst others, Genomic Applications for Crop Breeding: Biotic Stress will be an essential reference for crop scientists, geneticists, breeders, industry personnel and advanced students in the field.

Genetics, Genomics and Breeding of Potato

Genetics, Genomics and Breeding of Potato
Author: James M. Bradeen
Publisher: CRC Press
Total Pages: 326
Release: 2016-04-19
Genre: Science
ISBN: 1439868859

In this volume, world leaders in potato research review historical and contemporary discoveries resulting in a range of advances. Topics include nutritional quality, yield, disease and insect resistance, processing, plant growth and development, and other aspects. The book also examines research yielding significant molecular resources that facilit

The Potato Crop

The Potato Crop
Author: Hugo Campos
Publisher: Springer Nature
Total Pages: 524
Release: 2019-12-03
Genre: Science
ISBN: 3030286835

This book is open access under a CC BY 4.0 license. This book provides a fresh, updated and science-based perspective on the current status and prospects of the diverse array of topics related to the potato, and was written by distinguished scientists with hands-on global experience in research aspects related to potato. The potato is the third most important global food crop in terms of consumption. Being the only vegetatively propagated species among the world’s main five staple crops creates both issues and opportunities for the potato: on the one hand, this constrains the speed of its geographic expansion and its options for international commercialization and distribution when compared with commodity crops such as maize, wheat or rice. On the other, it provides an effective insulation against speculation and unforeseen spikes in commodity prices, since the potato does not represent a good traded on global markets. These two factors highlight the underappreciated and underrated role of the potato as a dependable nutrition security crop, one that can mitigate turmoil in world food supply and demand and political instability in some developing countries. Increasingly, the global role of the potato has expanded from a profitable crop in developing countries to a crop providing income and nutrition security in developing ones. This book will appeal to academics and students of crop sciences, but also policy makers and other stakeholders involved in the potato and its contribution to humankind’s food security.

Metabolic Interaction in Infection

Metabolic Interaction in Infection
Author: Ricardo Silvestre
Publisher: Springer
Total Pages: 478
Release: 2018-04-06
Genre: Science
ISBN: 3319749323

This book focuses on host–pathogen interactions at the metabolic level. It explores the metabolic requirements of the infectious agents, the microbial metabolic pathways that are dedicated to circumvent host immune mechanisms as well as the molecular mechanisms by which pathogens hijack host cell metabolism for their own benefit. Finally, it provides insights on the possible clinical and immunotherapeutic applications, as well as on the available experimental and analytical methods. The contributions break new ground in understanding the metabolic crosstalk between host and pathogen.

Microbial Plant Pathogens

Microbial Plant Pathogens
Author: Perumal Narayanasamy
Publisher: John Wiley & Sons
Total Pages: 1176
Release: 2016-12-08
Genre: Technology & Engineering
ISBN: 1119195780

Healthy seeds and propagules are the basic requirement for producing good grains, fruits and vegetables needed for human survival and perpetuation. Dispersal of microbial plant pathogens via seeds and propagules has assumed more importance than other modes of dispersal, as infected seeds and propagules have the potential to become the primary sources of carrying pathogen inoculum for subsequent crops. Several diseases transmitted through seeds and propagules have been shown to have the potential to damage economies as a result of huge quantitative and qualitative losses in numerous crops. Hence, it is essential to rapidly detect, identify and differentiate the microbial plant pathogens present in seeds and propagules precisely and reliably, using sensitive techniques. Microbial Plant Pathogens: Detection and Management in Seeds and Propagules provides a comprehensive resource on seed-borne and propagule-borne pathogens. Information on the biology of microbial pathogens, including genetic diversity, infection process and survival mechanisms of pathogens and epidemiology of diseases caused by them, are discussed critically and in detail to highlight weak links in the life cycles of the pathogens. Development of effective disease management systems, based on the principles of exclusion and eradication of pathogens and immunization of crop plants to enhance the levels of resistance of cultivars to diseases, has been effective to keep the pathogens at bay. The need for production of disease-free seeds/propagules has been emphasized to prevent the carryover of the inoculum to the next crop or introduction of the pathogens to other locations. Effectiveness of adopting simple cultural practices and development of cultivars resistant to diseases through traditional breeding methods or biotechnological approach have resulted in reducing the pathogen inoculum and disease incidence. Although application of different chemicals may reduce the disease incidence effectively, biological management of crop diseases, employing potential biological control agents have to be preferred to preserve the agroecosystems. Greater efforts have to be made to integrate compatible strategies to enhance the effectiveness of diseases management systems. Protocols appended at the end of relevant chapters form a unique feature of this book to enable the researchers to fine-tune their projects. This 2 volume set provides comprehensive and updated information about the economically-important groups of microbial plant pathogens carried by seed and propagules. Graduate students, researchers and teachers of plant pathology, plant protection, microbiology, plant breeding and genetics, agriculture and horticulture, as well as certification and quarantine personnel will find the information presented in this book useful.