Xml Data Representation And Transformations For Bioinformatics
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| Author | : Ethan Cerami |
| Publisher | : Springer Science & Business Media |
| Total Pages | : 311 |
| Release | : 2006-06-02 |
| Genre | : Computers |
| ISBN | : 0387274782 |
Introduction The goal of this book is to introduce XML to a bioinformatics audience. It does so by introducing the fundamentals of XML, Document Type De?nitions (DTDs), XML Namespaces, XML Schema, and XML parsing, and illustrating these concepts with speci?c bioinformatics case studies. The book does not assume any previous knowledge of XML and is geared toward those who want a solid introduction to fundamental XML concepts. The book is divided into nine chapters: Chapter 1: Introduction to XML for Bioinformatics. This chapter provides an introduction to XML and describes the use of XML in biological data exchange. A bird’s-eye view of our ?rst case study, the Distributed Annotation System (DAS), is provided and we examine a sample DAS XML document. The chapter concludes with a discussion of the pros and cons of using XML in bioinformatic applications. Chapter 2: Fundamentals of XML and BSML. This chapter introduces the fundamental concepts of XML and the Bioinformatic Sequence Markup Language (BSML). We explore the origins of XML, de?ne basic rules for XML document structure, and introduce XML Na- spaces. We also explore several sample BSML documents and visualize these documents in the TM Rescentris Genomic Workspace Viewer.
| Author | : Horacio Pérez-Sánchez |
| Publisher | : BoD – Books on Demand |
| Total Pages | : 340 |
| Release | : 2012-11-28 |
| Genre | : Computers |
| ISBN | : 9535108786 |
This book is divided into different research areas relevant in Bioinformatics such as biological networks, next generation sequencing, high performance computing, molecular modeling, structural bioinformatics, molecular modeling and intelligent data analysis. Each book section introduces the basic concepts and then explains its application to problems of great relevance, so both novice and expert readers can benefit from the information and research works presented here.
| Author | : Christine Orengo |
| Publisher | : Taylor & Francis |
| Total Pages | : 393 |
| Release | : 2003-12-16 |
| Genre | : Science |
| ISBN | : 1135325235 |
Bioinformatics, the use of computers to address biological questions, has become an essential tool in biological research. It is one of the critical keys needed to unlock the information encoded in the flood of data generated by genome, protein structure, transcriptome and proteome research. Bioinformatics: Genes, Proteins & Computers covers both the more traditional approaches to bioinformatics, including gene and protein sequence analysis and structure prediction, and more recent technologies such as datamining of transcriptomic and proteomic data to provide insights on cellular mechanisms and the causes of disease.
| Author | : |
| Publisher | : BoD – Books on Demand |
| Total Pages | : 194 |
| Release | : 2024-10-23 |
| Genre | : Technology & Engineering |
| ISBN | : 1837692882 |
Nanoscience and nanotechnology are poised for continued growth due to their numerous benefits in everyday life, including applications in human health, food processing, environmental safety, and device engineering. Nanomaterials have been utilized unknowingly for thousands of years; for instance, gold nanoparticles were used in medicine and to stain drinking glasses. Biocompatible smart nanosystems can create multifunctional platforms for diverse technical and biomedical applications, such as sensing, environmental remediation, catalysis, biomedicine, and optoelectronics. In this book, esteemed researchers from all over the world have contributed research and review articles on smart nanosystems across various aspects. This compilation is designed to be valuable for nanoscience research groups as well as Ph.D. and graduate students, introducing them to the world of smart nanosystems and opening new ways of exploring their possible use in diverse scientific and practical areas.
| Author | : Akmal B. Chaudhri |
| Publisher | : Addison-Wesley Professional |
| Total Pages | : 682 |
| Release | : 2003 |
| Genre | : Computers |
| ISBN | : 9780201844528 |
In this book, you will find discussions on the newest native XML databases, along with information on working with XML-enabled relational database systems. In addition, XML Data Management thoroughly examines benchmarks and analysis techniques for performance of XML databases. This book is best used by students that are knowledgeable in database technology and are familiar with XML.
| Author | : Limsoon Wong |
| Publisher | : World Scientific |
| Total Pages | : 401 |
| Release | : 2005-01-06 |
| Genre | : Science |
| ISBN | : 1783260599 |
High-throughput sequencing and functional genomics technologies have given us a draft human genome sequence and have enabled large-scale genotyping and gene expression profiling of human populations. Databases containing large number of sequences, polymorphisms, and gene expression profiles of normal and diseased tissues in different clinical states are rapidly being generated for human and model organisms. Bioinformatics is thus rapidly growing in importance in the annotation of genomic sequences, in the understanding of the interplay between genes and proteins, in the analysis the genetic variability of species, etc. The 3rd APBC brings together researchers, professionals, and industrial practitioners for interaction and exchange of knowledge and ideas. The proceedings contains the latest results that address conceptual and practical issues of bioinformatics.Papers presented at APBC'05 and included in this proceedings volume span the following: Novel Applications in Bioinformatics, Computational Analysis of Biological Data, Data Mining & Statistical Modeling of Biological Data, Modeling and Simulation of Biological Processes, Visualization of Biological Processes and Data, Management, Migration, and Integration of Biological Databases, Access, Indexing, and Search in Biological Databases.
| Author | : Shalini Suri |
| Publisher | : APH Publishing |
| Total Pages | : 292 |
| Release | : 2006 |
| Genre | : Bioinformatics |
| ISBN | : 9788131300121 |
With the advent of the new millennium, the scientific community marked a significant milestone in th study of bioinformation. This book attempts to keep up with the quick pace of change in this field, reinforcing concepts that have stood the test of time while making the reader aware of new approaches and algorithms that have emerged. This book is an essential reading for researchers, instructors, and students of all levels in molecular biology and bioinformatics, as well as for investigators involved in genomics, clinical research, proteomics, and computational biology.
| Author | : Abdelkader Hameurlain |
| Publisher | : Springer |
| Total Pages | : 232 |
| Release | : 2016-01-06 |
| Genre | : Computers |
| ISBN | : 3662492148 |
This, the 24th issue of Transactions on Large-Scale Data- and Knowledge-Centered Systems, contains extended and revised versions of seven papers presented at the 25th International Conference on Database and Expert Systems Applications, DEXA 2014, held in Munich, Germany, in September 2014. Following the conference, and two further rounds of reviewing and selection, six extended papers and one invited keynote paper were chosen for inclusion in this special issue. Topics covered include systems modeling, similarity search, bioinformatics, data pricing, k-nearest neighbor querying, database replication, and data anonymization.
| Author | : Zoé Lacroix |
| Publisher | : Elsevier |
| Total Pages | : 464 |
| Release | : 2003-09-08 |
| Genre | : Computers |
| ISBN | : 0080527981 |
Life science data integration and interoperability is one of the most challenging problems facing bioinformatics today. In the current age of the life sciences, investigators have to interpret many types of information from a variety of sources: lab instruments, public databases, gene expression profiles, raw sequence traces, single nucleotide polymorphisms, chemical screening data, proteomic data, putative metabolic pathway models, and many others. Unfortunately, scientists are not currently able to easily identify and access this information because of the variety of semantics, interfaces, and data formats used by the underlying data sources. Bioinformatics: Managing Scientific Data tackles this challenge head-on by discussing the current approaches and variety of systems available to help bioinformaticians with this increasingly complex issue. The heart of the book lies in the collaboration efforts of eight distinct bioinformatics teams that describe their own unique approaches to data integration and interoperability. Each system receives its own chapter where the lead contributors provide precious insight into the specific problems being addressed by the system, why the particular architecture was chosen, and details on the system's strengths and weaknesses. In closing, the editors provide important criteria for evaluating these systems that bioinformatics professionals will find valuable. * Provides a clear overview of the state-of-the-art in data integration and interoperability in genomics, highlighting a variety of systems and giving insight into the strengths and weaknesses of their different approaches. * Discusses shared vocabulary, design issues, complexity of use cases, and the difficulties of transferring existing data management approaches to bioinformatics systems, which serves to connect computer and life scientists. * Written by the primary contributors of eight reputable bioinformatics systems in academia and industry including: BioKris, TAMBIS, K2, GeneExpress, P/FDM, MBM, SDSC, SRS, and DiscoveryLink.
| Author | : De-Shuang Huang |
| Publisher | : Springer Science & Business Media |
| Total Pages | : 824 |
| Release | : 2006-08-03 |
| Genre | : Computers |
| ISBN | : 3540372776 |
This book constitutes the refereed proceedings of the International Conference on Intelligent Computing, ICIC 2006, held in Kunming, China, in August 2006. The book presents 165 revised full papers, carefully reviewed. Topics covered include ant colony optimization, particle swarm optimization, swarm intelligence, autonomy-oriented computing, quantum and molecular computations, biological and DNA computing, intelligent computing in bioinformatics, intelligent computing in computational biology and drug design, computational genomics and proteomics, and more.
