Viral Molecular Machines

Viral Molecular Machines
Author: Michael G. Rossmann
Publisher: Springer Science & Business Media
Total Pages: 685
Release: 2012-02-02
Genre: Medical
ISBN: 1461409802

This book will contain a series of solicited chapters that concern with the molecular machines required by viruses to perform various essential functions of virus life cycle. The first three chapters (Introduction, Molecular Machines and Virus Architecture) introduce the reader to the best known molecular machines and to the structure of viruses. The remainder of the book will examine in detail various stages of the viral life cycle. Beginning with the viral entry into a host cell, the book takes the reader through replication of the genome, synthesis and assembly of viral structural components, genome packaging and maturation into an infectious virion. Each chapter will describe the components of the respective machine in molecular or atomic detail, genetic and biochemical analyses, and mechanism. Topics are carefully selected so that the reader is exposed to systems where there is a substantial infusion of new knowledge in recent years, which greatly elevated the fundamental mechanistic understanding of the respective molecular machine. The authors will be encouraged to simplify the detailed knowledge to basic concepts, include provocative new ideas, as well as design colorful graphics, thus making the cutting-edge information accessible to broad audience.

Viral Molecular Machines

Viral Molecular Machines
Author: Michael G. Rossmann
Publisher: Springer
Total Pages: 687
Release: 2016-08-23
Genre: Medical
ISBN: 9781493950850

This book will contain a series of solicited chapters that concern with the molecular machines required by viruses to perform various essential functions of virus life cycle. The first three chapters (Introduction, Molecular Machines and Virus Architecture) introduce the reader to the best known molecular machines and to the structure of viruses. The remainder of the book will examine in detail various stages of the viral life cycle. Beginning with the viral entry into a host cell, the book takes the reader through replication of the genome, synthesis and assembly of viral structural components, genome packaging and maturation into an infectious virion. Each chapter will describe the components of the respective machine in molecular or atomic detail, genetic and biochemical analyses, and mechanism. Topics are carefully selected so that the reader is exposed to systems where there is a substantial infusion of new knowledge in recent years, which greatly elevated the fundamental mechanistic understanding of the respective molecular machine. The authors will be encouraged to simplify the detailed knowledge to basic concepts, include provocative new ideas, as well as design colorful graphics, thus making the cutting-edge information accessible to broad audience.

Cell Biology by the Numbers

Cell Biology by the Numbers
Author: Ron Milo
Publisher: Garland Science
Total Pages: 400
Release: 2015-12-07
Genre: Science
ISBN: 1317230698

A Top 25 CHOICE 2016 Title, and recipient of the CHOICE Outstanding Academic Title (OAT) Award. How much energy is released in ATP hydrolysis? How many mRNAs are in a cell? How genetically similar are two random people? What is faster, transcription or translation?Cell Biology by the Numbers explores these questions and dozens of others provid

Structure and Physics of Viruses

Structure and Physics of Viruses
Author: Mauricio G. Mateu
Publisher: Springer Science & Business Media
Total Pages: 734
Release: 2013-06-04
Genre: Medical
ISBN: 9400765525

This book contemplates the structure, dynamics and physics of virus particles: From the moment they come into existence by self-assembly from viral components produced in the infected cell, through their extracellular stage, until they recognise and infect a new host cell and cease to exist by losing their physical integrity to start a new infectious cycle. (Bio)physical techniques used to study the structure of virus particles and components, and some applications of structure-based studies of viruses are also contemplated. This book is aimed first at M.Sc. students, Ph.D. students and postdoctoral researchers with a university degree in biology, chemistry, physics or related scientific disciplines who share an interest or are actually working on viruses. We have aimed also at providing an updated account of many important concepts, techniques, studies and applications in structural and physical virology for established scientists working on viruses, irrespective of their physical, chemical or biological background and their field of expertise. We have not attempted to provide a collection of for-experts-only reviews focused mainly on the latest research in specific topics; we have not generally assumed that the reader knows all of the jargon and all but the most recent and advanced results in each topic dealt with in this book. In short, we have attempted to write a book basic enough to be useful to M.Sc and Ph.D. students, as well as advanced and current enough to be useful to senior scientists with an interest in Structural and/or Physical Virology.

Molecular Biology of Assemblies and Machines

Molecular Biology of Assemblies and Machines
Author: Alasdair Steven
Publisher: Garland Science
Total Pages: 1396
Release: 2016-02-18
Genre: Medical
ISBN: 1134982828

Molecular Biology of Assemblies and Machines provides a comprehensive narrative of the ways in which macromolecular structures assemble and how they interact with other complexes and organelles in the cell. Richly illustrated in full color, the text is written for advanced undergraduates, graduate students, and researchers in biochemistry, molecular biology, biophysics, cell biology, chemistry, structural biology, immunology, microbiology, and medicine.

Dissecting the Operating Mechanism of a Biological Motor One Molecule at a Time

Dissecting the Operating Mechanism of a Biological Motor One Molecule at a Time
Author: Gheorghe Chistol
Publisher:
Total Pages: 162
Release: 2013
Genre:
ISBN:

Double-stranded DNA viruses, including most bacteriophages and mammalian herpesviruses, package their genomes into a pre-formed protein capsid during their self-assembly. DNA is compacted to near-crystalline densities at the end of packaging. This remarkable mechanical task is performed by a powerful ATP-driven molecular machine known as the packaging motor. Bacteriophage Phi29, a model system for studying DNA packaging, has a 19.3-kbp genome and its packaging motor is composed of a connector, an RNA scaffold, and a pentameric ring ATPase. Ring ATPases of the ASCE superfamily perform a variety of cellular functions. An important question about the operation of these molecular machines is how the ring subunits coordinate their chemical and mechanical transitions. Here we present the first comprehensive mechanochemical characterization of a homomeric ring ATPase - Phi29 gp16 - which translocates dsDNA in cycles composed of alternating dwells and bursts. We use high-resolution optical tweezers to determine the effect of nucleotide analogs on the cycle. We find that ATP hydrolysis occurs sequentially during the burst and that ADP release is interlaced with ATP binding during the dwell, revealing a high degree of coordination among ring subunits. Moreover, we show that the motor displays an unexpected division of labor: although all subunits of the homo-pentamer bind and hydrolyze ATP during each cycle, only four participate in translocation whereas the remaining subunit plays an ATP-dependent regulatory role. Several viral packaging motors have been shown to slow down as the capsid fills up with DNA, but it remains unclear how the packaging velocity is regulated. Here we use high-resolution optical tweezers to monitor the base-pair-scale packaging dynamics at various degrees of capsid filling. By comparing the burst duration at various degrees of capsid filling and different external forces, we estimate an internal force of ~20 pN at 100% filling, much lower than the motor's stall force. We find that the motor's step size is continuously modulated by capsid filling, in quantitative agreement with measurements of DNA rotation by the Phi29 packaging motor. In addition, we find the motor switches on and off at high filling by entering into long-lived pauses, which may allow DNA relaxation within the capsid. Together, our results reveal that the motor is not passively stalled by a large internal force at high filling as suggested by previous models. Instead, the motor is actively throttled down via several mechanisms in response to DNA encapsidation. The intricate crosstalk between the motor and the capsid plays a key role in orchestrating the molecular events leading to packaging termination and virus maturation, and may represent a general design principle shared by different viruses.