The Effect of Roots and Ectomycorrhizal Fungi on Carbon Cycling in Forest Soils

The Effect of Roots and Ectomycorrhizal Fungi on Carbon Cycling in Forest Soils
Author: Naomi R. Voke
Publisher:
Total Pages:
Release: 2012
Genre:
ISBN:

Though the input of labile substrates into the rhizosphere by roots is known to promote decomposition of both soil organic matter (SOM) and surface litter, the presence of ectomycorrhizal (ECM) fungi living in symbiosis with plant roots has been shown to coincide with decreased litter decomposition rates in some systems. In a series of field experiments, techniques including forest girdling and soil trenching were used to exclude roots and ECM fungi in order to investigate the mechanisms controlling litter decomposition in forest soils. Soil trenching was carried out in combination with litter bag incubations, and measurements of soil CO2 flux in a 20 year-old Pinus contorta stand. The use of mesh in-growth collars allowed the influence of ECM fungal hyphae on litter mass loss, and their contribution to soil CO2 flux, to be established separately to that of roots. A specialised irrigation system allowed moisture effects caused by root/ECM hyphal water uptake to be investigated. Neither the presence of roots, nor ECM fungi had any influence on litter decomposition, and soil temperature was the only factor found to correlate with litter mass loss. The exclusion of roots and ECM hyphae led to increased utilisation of a simple substrate, 13C-labelled glucose. Results of incubations of four substrates, varying in structural complexity and nitrogen (N) content, suggested that the rapid utilisation of simple substrates by r-strategist microorganisms might be suppressed in the presence of ECM fungi. Though N content appeared to have a positive influence on substrate decomposition, the results were not significant. In contrast, when forest girdling was used in a nearby Tsuga heterophylla stand to exclude plant-assimilate C supply to the soil, a significant reduction in the rate of litter mass loss was observed. The results presented in this thesis indicate a potentially large role of ECM fungi in controlling decomposition in forest soils, and the mechanisms underlying their influence require further investigation.

Controls of Microbially Mediated Soil Carbon Cycling

Controls of Microbially Mediated Soil Carbon Cycling
Author: Samuel Evan Barnett
Publisher:
Total Pages: 0
Release: 2021
Genre:
ISBN:

Soil dwelling microorganisms are essential components of numerous ecosystem processes and biogeochemical cycles. In particular, they are important actors in terrestrial carbon cycling, producing and turning over soil organic matter. Microbially mediated soil carbon cycling can be influenced by environmental conditions, with soil organic matter dynamics and carbon fate varying across biomes. Drastic alterations to soil habitat conditions brought about through anthropogenic changes to land-use (e.g. agriculture) can greatly influence these processes. However, we are limited in our understanding of how land-use regimes and other environmental conditions control microbially mediated soil carbon cycling. I took three approaches to explore this relationship. First, I examined how bacterial community assembly and composition differed across cropland, old-field, and forest soils. I found that homogeneous selection, whereby selection pressure causes bacterial communities to be more phylogenetically similar to each other than expected by random assembly from a metacommunity, was the dominant bacterial community assembly process across all three land-use types. However, I also found that land-use interacted with soil pH to drive the balance between stochastic and deterministic assembly processes. This result indicates a mechanism by which microbial communities may develop differently across land-use regimes. Second, I examined the overall organic matter turnover across land-use regimes and the identity of the bacterial taxa actively involved in this carbon processing. I found that the dynamics of organic matter turnover and the active bacterial populations involved were distinct across land-use regimes. From these patterns I developed a conceptual model explaining how initial microbial biomass, which is impacted by land-use, may control bacterial activities in organic matter turnover. Finally, I examined the genomic basis of bacterial life history strategies, specifically the copiotroph-oligotroph continuum. Life history strategy can explain both bacterial activity in soil carbon cycling and bacterial response to environmental change. I found that the abundance of transcription factor genes and genes encoding a secretion signal peptide were both genomic signatures of the copiotroph-oligotroph continuum. These signatures can be used to classify diverse microbes based on their life history strategy and may further explain the biological drivers of these strategies. I also developed a toolkit, MetaSIPSim, that simulates metagenomic DNA-stable isotope probing datasets. Such datasets can be used to improve metagenomic DNA-stable isotope probing methodologies and analyses, which in turn can be used to link microbial genes and genomes to in situ carbon cycling activity. Overall, this work advances our knowledge of, and ability to study the ecological and biological controls of bacterially mediated soil carbon cycling.

Root-associated Fungal Diversity, Nutrient Mineralization and Micro-climatic Interconnections

Root-associated Fungal Diversity, Nutrient Mineralization and Micro-climatic Interconnections
Author: Korena Mafune
Publisher:
Total Pages: 183
Release: 2021
Genre:
ISBN:

The temperate rainforests of western Washington are commonly recognized for their extensive areas of old-growth forest and more recently their unique canopy soil environment. Over the last 40 years, fundamental studies on canopy soils have emphasized their importance as structural and functional components of these ecosystems; but there remain many unknowns on the biotic and abiotic processes in canopy soil environments, how these may be impacted by climate change, and the implications this may have on host tree resiliency. For example, old-growth bigleaf maple trees (Acer macrophyllum Pursh.) grow extensive adventitious roots that form fungal associations. However, no studies have explored the diversity of these adventitious canopy root associated fungal communities and how they compare to forest floor rooting networks. Further, no studies have explored the seasonal mineralization rates of plant available nutrients in canopy soils and how they enhance forest-level nutrient cycling. Therefore, this study aimed to not only compare these biotic and abiotic processes between the two soil environments, but it also aimed to shed light on how these processes may be impacted by increased and decreased rainfall amounts to better understand how these trees may be affected by climate change. Prior to identifying fungal communities associating with roots in canopy and forest floor soil environments, a methodological approach for long-read sequencing of fungi was designed and tested on the MinION Nanopore Sequencer. To assess the capabilities of the MinION, three fungal mock communities were sequenced. Each had varying ratios of 16 taxa. The MinION recovered all mock community members, when mixed at equal ratios. Highly accurate consensus sequences were derived and identified to species level, proving that the MinION was suitable as a practical alternative to gain insights on root-associated fungal communities. After benchmarking this technology, roots were collected from canopy and forest floor environments to determine if there were any differences in the percent of fungal colonization. There was no significant difference between the percent of fungi colonizing adventitious canopy roots (56.5% ± 5.4) and forest floor roots (65.1% ± 3.6). Subsequently, a rainfall experiment was implemented and root associated fungal communities were identified seasonally (excluding winter) over the duration of one year. At ambient conditions, root associated fungal community composition was significantly different between the two old-growth sites and also between canopy and forest floor environments. However, these communities did not shift in response to seasonal changes. In canopy soil environments, the increased and decreased rainfall experiments and site differences also significantly affected fungal community composition; seasonality also had an effect. The MinION was able to identify a diversity of obligate mutualists and facultative endophytes. There were several species associating with adventitious canopy roots that have never been reported to associate with bigleaf maple prior to this study. Nitrogen (N) and phosphorus (P) mineralization rates were also determined seasonally during the rainfall experiment as well as annual N and P pools. In canopy soil environments, both the rainfall treatments and seasonality had a significant effect on N mineralization rates. Phosphorus mineralization rates were also impacted by the rainfall treatments. On a per mass basis at ambient conditions, canopy soils have higher rates of net N (355.3 ± 54.7 mg N kg-1 yr-1) and net P mineralization (387.6 ± 34.5 mg PO4-P kg-1 yr-1) than forest floor soils (58.2 ± 3.9 mg N kg-1 yr-1 and 387.6 ± 34.5 mg PO4-P kg-1 yr-1). When converted to an areal basis, canopy soils enhanced the annual NO3-N, NH4-N, and PO4-P mineralization pools by 5.2%, 48.4%, and 3.7%, respectively. Additionally, some of these resources are leaching to the forest floor soil environment. The first part of this study benchmarked a methodological approach that was utilized throughout the project and allowed the inference of genus and species-level resolution in canopy and forest floor environments. The other two parts of this study demonstrated that canopy soils provide an extra compartment for nutrients and that adventitious rooting systems are associating with a diversity of fungi distinct from forest floor environments. Further, higher and lower inputs of rainfall impact these biotic interactions, as well as the nutrient dynamics. Collectively, this research reveals that fungal communities associating with adventitious roots may be acting as adaptive facilitators to environmental extremes (e.g., climatic changes) and that biogeochemical cycles in canopy soils and their inputs to the ecosystem should not be overlooked.

Environmental Consequences of the Chernobyl Accident and Their Remediation

Environmental Consequences of the Chernobyl Accident and Their Remediation
Author: International Atomic Energy Agency
Publisher: IAEA
Total Pages: 166
Release: 2006
Genre: Science
ISBN: 9789201147059

The explosion on 26 April 1986 at the Chernobyl nuclear power plant and the consequent reactor fire resulted in an unprecedented release of radioactive material from a nuclear reactor and adverse consequences for the public and the environment. Although the accident occurred nearly two decades ago, controversy still surrounds the real impact of the disaster. Therefore the IAEA, in cooperation with other UN bodies, the World Bank, as well as the competent authorities of Belarus, the Russian Federation and Ukraine, established the Chernobyl Forum in 2003. The mission of the Forum was to generate 'authoritative consensual statements' on the environmental consequences and health effects attributable to radiation exposure arising from the accident as well as to provide advice on environmental remediation and special health care programmes, and to suggest areas in which further research is required. This report presents the findings and recommendations of the Chernobyl Forum concerning the environmental effects of the Chernobyl accident.

Impact of Cesium on Plants and the Environment

Impact of Cesium on Plants and the Environment
Author: Dharmendra K. Gupta
Publisher: Springer
Total Pages: 324
Release: 2016-10-14
Genre: Science
ISBN: 3319415255

This book provides extensive and comprehensive knowledge to the researchers/academics who are working in the field of cesium contaminated sites, and the impact on plants. This book is also helpful for graduate and undergraduate students who are specializing in radioecology or safe disposal of radioactive waste, remediation of legacies and the impact on the environment. Radiocesium (137Cs and 134Cs) was released into the environment as a result of nuclear weapons testing in 1950s and 1960s (~1x1018 Bq), and later due to the Chernobyl accident in 1986 (8.5x1016 Bq) and Fukushima Daiichi Nuclear Power Plant in 2011 (~1x1017 Bq). 137Cs is still of relevance due to its half-life of 30 years. The study of radioisotope 137Cs is important, as production and emission rates are high compared to other radioisotopes, due to high fission yield and high volatility. This book contains original work and reviews on how cesium is released into the environment on translocation from soil to plants and further on to animals and into the human food chain. Separate chapters focus on the effective half-life of cesium in plants and on how different cultivars are responding in accumulation of cesium. Other key chapters focus on cesium impact on single cells to higher plants and also on remediation measures as well as on basic mechanism used for remedial options and analysis of transfer factors. The book rounds off by contributions on cesium uptake and translocation and its toxicity in plants after the Chernobyl and Fukushima accidents.

Plant Roots

Plant Roots
Author: Peter J. Gregory
Publisher: John Wiley & Sons
Total Pages: 328
Release: 2008-04-15
Genre: Technology & Engineering
ISBN: 1405173084

The root system is a vital part of the plant and therefore understanding roots and their functioning is key to agricultural, plant and soil scientists. In Plant Roots Professor Peter Gregory brings together recent developments in techniques and an improved understanding of plant and soil interactions to present a comprehensive look at this important relationship, covering: Root response to, and modification of, soils Genetic control of roots’ responses to the environment Use of modern techniques in imaging, molecular biology and analytical chemistry Practical exploitation of root characters This book will be a vital tool for plant, crop, soil and agricultural scientists, plant physiologists, environmental scientists, ecologists and hydrologists. It will be a valuable addition to libraries in universities, agricultural colleges and research establishments where these subjects are studied and taught.

Biogeochemistry of Wetlands

Biogeochemistry of Wetlands
Author: K. Ramesh Reddy
Publisher: CRC Press
Total Pages: 926
Release: 2022-09-10
Genre: Science
ISBN: 0429531931

The globally important nature of wetland ecosystems has led to their increased protection and restoration as well as their use in engineered systems. Underpinning the beneficial functions of wetlands are a unique suite of physical, chemical, and biological processes that regulate elemental cycling in soils and the water column. This book provides an in-depth coverage of these wetland biogeochemical processes related to the cycling of macroelements including carbon, nitrogen, phosphorus, and sulfur, secondary and trace elements, and toxic organic compounds. In this synthesis, the authors combine more than 100 years of experience studying wetlands and biogeochemistry to look inside the black box of elemental transformations in wetland ecosystems. This new edition is updated throughout to include more topics and provide an integrated view of the coupled nature of biogeochemical cycles in wetland systems. The influence of the elemental cycles is discussed at a range of scales in the context of environmental change including climate, sea level rise, and water quality. Frequent examples of key methods and major case studies are also included to help the reader extend the basic theories for application in their own system. Some of the major topics discussed are: Flooded soil and sediment characteristics Aerobic-anaerobic interfaces Redox chemistry in flooded soil and sediment systems Anaerobic microbial metabolism Plant adaptations to reducing conditions Regulators of organic matter decomposition and accretion Major nutrient sources and sinks Greenhouse gas production and emission Elemental flux processes Remediation of contaminated soils and sediments Coupled C-N-P-S processes Consequences of environmental change in wetlands# The book provides the foundation for a basic understanding of key biogeochemical processes and its applications to solve real world problems. It is detailed, but also assists the reader with box inserts, artfully designed diagrams, and summary tables all supported by numerous current references. This book is an excellent resource for senior undergraduates and graduate students studying ecosystem biogeochemistry with a focus in wetlands and aquatic systems.