Genetics and Genomics of the Brassicaceae

Genetics and Genomics of the Brassicaceae
Author: Renate Schmidt
Publisher: Springer Science & Business Media
Total Pages: 675
Release: 2010-12-03
Genre: Science
ISBN: 1441971181

The Genetics and Genomics of the Brassicaceae provides a review of this important family (commonly termed the mustard family, or Cruciferae). The family contains several cultivated species, including radish, rocket, watercress, wasabi and horseradish, in addition to the vegetable and oil crops of the Brassica genus. There are numerous further species with great potential for exploitation in 21st century agriculture, particularly as sources of bioactive chemicals. These opportunities are reviewed, in the context of the Brassicaceae in agriculture. More detailed descriptions are provided of the genetics of the cultivated Brassica crops, including both the species producing most of the brassica vegetable crops (B. rapa and B. oleracea) and the principal species producing oilseed crops (B. napus and B. juncea). The Brassicaceae also include important “model” plant species. Most prominent is Arabidopsis thaliana, the first plant species to have its genome sequenced. Natural genetic variation is reviewed for A. thaliana, as are the genetics of the closely related A. lyrata and of the genus Capsella. Self incompatibility is widespread in the Brassicaceae, and this subject is reviewed. Interest arising from both the commercial value of crop species of the Brassicaceae and the importance of Arabidopsis thaliana as a model species, has led to the development of numerous resources to support research. These are reviewed, including germplasm and genomic library resources, and resources for reverse genetics, metabolomics, bioinformatics and transformation. Molecular studies of the genomes of species of the Brassicaceae revealed extensive genome duplication, indicative of multiple polyploidy events during evolution. In some species, such as Brassica napus, there is evidence of multiple rounds of polyploidy during its relatively recent evolution, thus the Brassicaceae represent an excellent model system for the study of the impacts of polyploidy and the subsequent process of diploidisation, whereby the genome stabilises. Sequence-level characterization of the genomes of Arabidopsis thaliana and Brassica rapa are presented, along with summaries of comparative studies conducted at both linkage map and sequence level, and analysis of the structural and functional evolution of resynthesised polyploids, along with a description of the phylogeny and karyotype evolution of the Brassicaceae. Finally, some perspectives of the editors are presented. These focus upon the Brassicaceae species as models for studying genome evolution following polyploidy, the impact of advances in genome sequencing technology, prospects for future transcriptome analysis and upcoming model systems.

The Brassica oleracea Genome

The Brassica oleracea Genome
Author: Shengyi Liu
Publisher: Springer Nature
Total Pages: 164
Release: 2021-03-04
Genre: Science
ISBN: 3030310051

This book presents comprehensive information on genetics, genomics and breeding in Brassica oleracea, an agriculturally important species that includes popular vegetable crops such as cabbage, cauliflower, broccoli, Brussels sprouts, kale, collard greens, savoy, kohlrabi, and gai lan. The content spans whole genome sequencing, assembly and gene annotation for this global vegetable species, along with molecular mapping and cloning of genes, physical genome mapping and analyses of the structure and composition of centromeres in the B. oleracea genome. The book also elaborates on asymmetrical genome evolution and transposable elements in the B. oleracea describes gene family differentiation in comparison to other Brassica species and structural and functional genomic resources and data bases developed for B. oleracea. Useful discussions on the impact of genome sequencing on genetic improvement in the species are also included.

Genetical Analysis of Quantitative Traits

Genetical Analysis of Quantitative Traits
Author: Dr M Kearsey
Publisher: Garland Science
Total Pages: 396
Release: 2020-10-29
Genre: Science
ISBN: 1000144178

This text provides a guide to the experimental and analytical methodologies available to study quantitative traits, a review of the genetic control of quantitative traits, and a discussion of how this knowledge can be applied to breeding problems and evolution.

Glucosinolates

Glucosinolates
Author: Jean-Michel Mérillon
Publisher: Springer
Total Pages: 0
Release: 2017-05-04
Genre: Science
ISBN: 9783319254616

This is the first comprehensive reference compilation on the substance class of glucosinolates. This handbook introduces the reader to the sulfur-containing glucosinolates (S-glucosides), a class of secondary metabolites of almost all plants of the order Capparales, in particular in the family Brassicaceae (e.g. broccoli and other cabbages), derived from glucose and an amino acid. The book illustrates the natural variety of glucosinolate structures, mainly derived from the precursor amino acid. Chapters describe the resulting rich bioactivity of the glucosides, for example as anti-cancer agents, insecticides, nematicides, fungicides, their potential phytotoxic effects, antimicrobial activity and their possible role in neurodegenerative diseases and human health. Different methods for the extraction, characterization, quantification and processing of the glucosinolates are introduced, and potential applications are discussed. The fate of glucosinolates during food processing is also briefly addressed. This handbook is written by leading experts and structured in different sections addressing the natural occurrence of glucosinolates, their (bio-)synthesis, bioactivity, food processing of glucosinolate-containing vegetables, health and disease-related aspects, biotechnology, and methods applied in glucosinolate-research. It is thus a rich reference source for every reader working in the field, from chemists and biotechnologists, to life scientists, pharmacists and medical scientists.

Gene Prediction

Gene Prediction
Author: Martin Kollmar
Publisher: Humana Press
Total Pages: 284
Release: 2019-05-19
Genre: Science
ISBN: 9781493991723

This volume introduces software used for gene prediction with focus on eukaryotic genomes. The chapters in this book describe software and web server usage as applied in common use-cases, and explain ways to simplify re-annotation of long available genome assemblies. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary computational requirements, step-by-step, readily reproducible computational protocols, and tips on troubleshooting and avoiding known pitfalls. Cutting-edge and thorough, Gene Prediction: Methods and Protocols is a valuable resource for researchers and research groups working on the assembly and annotation of single species or small groups of species. Chapter 3 is available open access under a CC BY 4.0 license via link.springer.com.

Annual Plant Reviews, Biology of the Plant Cuticle

Annual Plant Reviews, Biology of the Plant Cuticle
Author: Markus Riederer
Publisher: John Wiley & Sons
Total Pages: 456
Release: 2008-04-15
Genre: Science
ISBN: 140517157X

Annual Plant Reviews, Volume 23 A much clearer picture is now emerging of the fine structure of the plant cuticle and its surface, the composition of cuticular waxes and the biosynthetic pathways leading to them. Studies assessing the impact of UV radiation on plant life have emphasized the role of the cuticle and underlying epidermis as optical filters for solar radiation. The field concerned with the diffusive transport of lipophilic organic non-electrolytes across the plant cuticle has reached a state of maturity. A new paradigm has recently been proposed for the diffusion of polar compounds and water across the cuticle. In the context of plant ecophysiology, cuticular transpiration can now be placed in the perspective of whole-leaf water relations. New and unexpected roles have been assigned to the cuticle in plant development and pollen-stigma interactions. Finally, much progress has been made in understanding the cuticle as a specific and extraordinary substrate for the interactions of the plant with microorganisms, fungi and insects. This volume details the major developments of recent years in this important interdisciplinary area. It is directed at researchers and professionals in plant biochemistry, plant physiology, plant ecology, phytopathology and environmental microbiology, in both the academic and industrial sectors.

Invasion Genetics

Invasion Genetics
Author: Spencer C. H. Barrett
Publisher: John Wiley & Sons
Total Pages: 404
Release: 2016-09-19
Genre: Science
ISBN: 1118922166

Invasion Genetics: the Baker & Stebbins legacy provides a state-of-the-art treatment of the evolutionary biology of invasive species, whilst also revisiting the historical legacy of one of the most important books in evolutionary biology: The Genetics of Colonizing Species, published in 1965 and edited by Herbert Baker and G. Ledyard Stebbins. This volume covers a range of topics concerned with the evolutionary biology of invasion including: phylogeography and the reconstruction of invasion history; demographic genetics; the role of stochastic forces in the invasion process; the contemporary evolution of local adaptation; the significance of epigenetics and transgenerational plasticity for invasive species; the genomic consequences of colonization; the search for invasion genes; and the comparative biology of invasive species. A wide diversity of invasive organisms are discussed including plants, animals, fungi and microbes.

The Pangenome

The Pangenome
Author: Hervé Tettelin
Publisher: Springer Nature
Total Pages: 311
Release: 2020-04-30
Genre: Science
ISBN: 3030382818

This open access book offers the first comprehensive account of the pan-genome concept and its manifold implications. The realization that the genetic repertoire of a biological species always encompasses more than the genome of each individual is one of the earliest examples of big data in biology that opened biology to the unbounded. The study of genetic variation observed within a species challenges existing views and has profound consequences for our understanding of the fundamental mechanisms underpinning bacterial biology and evolution. The underlying rationale extends well beyond the initial prokaryotic focus to all kingdoms of life and evolves into similar concepts for metagenomes, phenomes and epigenomes. The book’s respective chapters address a range of topics, from the serendipitous emergence of the pan-genome concept and its impacts on the fields of microbiology, vaccinology and antimicrobial resistance, to the study of microbial communities, bioinformatic applications and mathematical models that tie in with complex systems and economic theory. Given its scope, the book will appeal to a broad readership interested in population dynamics, evolutionary biology and genomics.

Biology of Brassica Coenospecies

Biology of Brassica Coenospecies
Author: C. Gomez-Campo
Publisher: Elsevier
Total Pages: 501
Release: 1999-07-07
Genre: Technology & Engineering
ISBN: 0080528023

Brassica crop species and their allies (Raphanus, Sinapis, Eruca, etc.) are important sources of edible roots, stems, leaves, buds and inflorescences, as well as of edible or industrial oils, condiments and forage. Many well known names of plants or plant products, such as kale, cabbage, brocolli, cauliflower, Brussels sprouts, kohl-rabi, Chinese cabbage, turnip, rape, rutabaga, swede, colza or rapeseed, canola, mustard, rocket, etc. are directly associated to this botanical group.The scientific interest for this botanical group has run parallel to its economical importance, and research achievements in our days would have certainly appeared unimaginable only two decades ago. As the end of the millenium approaches, entirely new fields (transformation, somatic fusion, etc.) have been added to the classical ones. Thus, nobody can doubt the opportuneness of this book, which combines and presents both the basic and applied biological aspects of the Brassica species.