This chapter provides an overview of the ecology and food web dynamics of southern African intermittently open/closed estuaries (IOCEs). Intermittently open/closed estuaries experience periodic isolation from the ocean due to a sandbar at the mouth and account for some 71% of all estuaries along the southern African coastline. Field studies indicate that the ecosystem functioning of IOCEs is strongly linked mouth phase (open vs. closed) of these systems. During the closed phase, these systems are generally characterised by low biological diversity and elevated biomass of both invertebrates and vertebrates, which are thought to be sustained by elevated biomass of microphytoplankton and zooplankton within these systems. The low diversity can be related to the virtual absence of marine species within these systems due to the presence of a sandbar at the mouth which limits recruitment. The overflow of marine waters into the estuary during winter storms or spring high tides contributes to the recruit of marine breeding species into these systems. Heavy rainfall in the catchment areas of these systems culminates in the water levels of these systems rising until such time the estuary breaches. The breaching event coincides with the outflow of biologically rich estuarine waters into the marine environment and provides an opportunity for marine breeding species to recruit into these systems. Global warming is likely to contribute to changes in the hydrodynamics of these systems with a concurrent impact on the food webs of these systems.