Hydrogen as a Fuel

Hydrogen as a Fuel
Author: Richard Cammack
Publisher: CRC Press
Total Pages: 267
Release: 2001-11-15
Genre: Science
ISBN: 0203471040

There continues to be widespread interest in the applications of hydrogen as a clean fuel and its potential for local electricity production and use in transport. Recent years have seen a variety of breakthroughs in our understanding of the nature, structure, and biosynthesis of hydrogenases. This book is a timely description of these developments,

Nickel-substituted Rubredoxin as a Model Protein Scaffold for Hydrogen Production

Nickel-substituted Rubredoxin as a Model Protein Scaffold for Hydrogen Production
Author: Regina Estefania Treviño
Publisher:
Total Pages: 0
Release: 2022
Genre: Bioelectrochemistry
ISBN:

The utilization of enzymes as bioelectrocatalysts is of increasing interest due to their advantages in chemical specificity and catalytic rates. Emphasis has been placed on hydrogen producing biocatalysts to overcome drawbacks of current heterogeneous catalysts, including limited availability and poor selectivity. Native enzymes, such as the [NiFe] hydrogenase, have demonstrated extreme proficiency as bi-directional catalysts for proton reduction and hydrogen oxidation, inspiring a variety of small molecule and protein mimics. The utilization of a robust and stable protein scaffold with a similar primary coordination environment as the native enzyme can result in similar activity. Previous reports have demonstrated that nickel-substituted rubredoxin (NiRd) serves as a structural, functional and mechanistic model of the [NiFe] hydrogenase, active towards proton reduction electrochemically and in solution, with an identical primary coordination sphere at the nickel center as the native enzyme. While the mechanism of proton reduction has been experimentally and computationally modeled to be similar to that of the native enzyme, key catalytic intermediates have not yet been isolated and characterized. This project aims to address some of the limitations of this current model, such as significant overpotential and lack of spectroscopic characterization of catalytically competent intermediates. Further, correlation between redox activity and protein structure are investigated by modification of the protein primary sphere coordination site. Primary sphere mutants demonstrate changes in the redox and catalytic behavior dependent on the cysteine site being modified. Drastic changes to the primary coordination sphere are explored using electrochemistry along with optical, multiwavelength resonance Raman, X-ray and electron paramagnetic resonance spectroscopies. This study demonstrates the ability to keep and shut off catalysis, aiding in the understanding of enzyme selectivity and its correlations to active site structure and geometry. Expanding beyond the primary coordination sphere, changes to the secondary sphere have resulted in drastic changes to the turnover frequencies of the enzyme, with modest changes in overpotential. Previous work using electrochemical analysis of a suite of secondary sphere mutants have shown dramatic variation in the catalytic rates and redox activity of NiRd, with some mutants demonstrating a change in the proton reduction mechanism. The observed differences in catalytic and redox activity are hypothesized to arise from changes in the protein structure, dynamics and H-bonding networks. A structural study of a suite of secondary and primary sphere mutants utilizing Nuclear Magnetic Resonance (NMR) spectroscopy directly provides solution-phase information on protein dynamics. The small size of Rd (5.2 kDa) makes it an ideal candidate for NMR interrogations. Additionally, due to the high spin (S=1) active site of the NiIIRd artificial enzyme, and the favorable relaxation properties of pseudo-tetrahedral four coordinate NiII, paramagnetic NMR spectroscopy can be used to gain further insight into the metal electronic structure and the H-bonding network. The information gathered will identify key factors that affect catalysis within a model protein scaffold, allowing for not only rational catalyst design and catalyst optimization, but the development of paramagnetic NMR methodology that allows to probe structural changes by NiRd under catalytically relevant conditions.

Nickel-substituted Rubredoxin as a Protein-based Enzymatic Mimic for [NiFe] Hydrogenase

Nickel-substituted Rubredoxin as a Protein-based Enzymatic Mimic for [NiFe] Hydrogenase
Author: Jeffrey Worthington Slater
Publisher:
Total Pages:
Release: 2018
Genre: Electrochemistry
ISBN:

The energy crisis of the last decade has led to new and innovative approaches to combat this pressing issue. One leading candidate as an alternative fuel is hydrogen due to its derivability from water, its high energy density, and its status as a clean fuel. However, the current methods for hydrogen production are not economically feasible to replace fossil fuels because of a reliance on precious metal catalysts. A promising alternative for hydrogen catalysis is through the use of the enzymes hydrogenases, which utilize earth-abundant metals such as nickel and iron. Hydrogenases, however, are limited by their intolerance to oxygen, changes in temperature and pH, and the complexity of their biosynthesis. These factors, among others, leave little potential for industrial application, but hydrogenases can serve as inspiration for structural and functional models. One such model is the metalloprotein rubredoxin. Rubredoxin is a robust, electron-transfer protein with a promiscuous, tetrathiolate active site that binds a variety of metals. When the native iron is replaced with nickel, it mimics the primary coordination of the nickel site in the [NiFe] hydrogenase cofactor. We have demonstrated this construct not only acts as a structural model of hydrogenase, but also a functional mimic as it produces molecular hydrogen through the reduction of protons. The construct’s catalytic capabilities were probed with protein film electrochemistry (PFE), confirming the presence of a proton-coupled electron transfer process and inhibition from carbon monoxide, characteristics shared by the native hydrogenase. Through spectroscopic studies coupled to density functional theory calculations, a theoretical model of the Ni(II)Rd resting state was constructed and validated by resonance Raman spectroscopy. As typical PFE experiments were insufficient to investigate NiRd by standard enzymatic studies, a new quantitative PFE (qPFE) method that utilizes an internal protein film standard was created and validated on Rd. This technique allowed for the observation of mechanistic constraints that suggest a particular mechanism that matches that of the [NiFe] hydrogenase catalysis. This mechanism was validated through electrochemical simulations and DFT calculations. Lastly, this thesis presents preliminary data on a library of secondary sphere mutant variants around the NiRd active site. A wide range of characteristics is observed for the mutants, including an increase in activity by 10-fold and shifts in the catalytic onset potential over an 86 mV range. It has been previously demonstrated that these types of interactions greatly affect catalysis in the native hydrogenase as well, establishing NiRd as a mimic for the secondary sphere interactions of [NiFe] hydrogenase.

Bioinspired Catalysis

Bioinspired Catalysis
Author: Wolfgang Weigand
Publisher: John Wiley & Sons
Total Pages: 438
Release: 2014-08-18
Genre: Science
ISBN: 3527664181

This book provides an overview of bioinspired metal-sulfur catalysis by covering structures, activities and model complexes of enzymes exhibiting metal sulphur moieties in their active center.

Bioorganometallic Chemistry

Bioorganometallic Chemistry
Author: Wolfgang Weigand
Publisher: Walter de Gruyter GmbH & Co KG
Total Pages: 459
Release: 2020-06-08
Genre: Science
ISBN: 3110493977

Bioorganometallic Chemistry is an excellent introduction to this transdisciplinary field which is straddled with biochemistry, medicine and organometallic chemistry. The book is a comprehensive review on the latest advances of this rapidly growing area, as well as historical background and future trends, revealing a tremendous potential of bioorganometallic compounds as novel drug candidates and diagnostic tools.

Design and Construction of Coordination Polymers

Design and Construction of Coordination Polymers
Author: Mao-Chun Hong
Publisher: John Wiley & Sons
Total Pages: 428
Release: 2009-05-27
Genre: Science
ISBN: 0470467320

Design and Construction of Coordination Polymers Edited by Mao-Chun Hong Ling Chen A Unique Resource on coordination Polymers Coordination polymers are a growing, interdisciplinary field with numerous potential applications in chemistry and materials. Design and Construction of Coordination Polymers provides a comprehensive introduction to this field, focusing on synthetic strategies, structures, properties, and potential applications. Each chapter provides a unique perspective on coordination polymers, offering a dedicated approach as well as deeper insights on the most important facets of this interdisciplinary area. Combining the consistent editorial approach of a textbook with the up-to-date data and topics usually found in the latest monographs and handbooks, Design and Construction of Coordination Polymers offers an unparalleled reference to the state of the art. Among other topics, it covers: Coordination polymers with versatile structures Crystal engineering of coordination polymers Organic/inorganic hybrid complexes based on polyoxometalates Molecular-based magnetic and ferroelectric compounds Heavy main-group iodometalates Gas storage MOFs Bioinorganic coordination complexes Addressing a wide range of readers, Design and Construction of Coordination Polymers will prove an invaluable resource to everyone from senior-level undergraduate and graduate students to working scientists.

Nickel and Its Surprising Impact in Nature

Nickel and Its Surprising Impact in Nature
Author: Astrid Sigel
Publisher: John Wiley & Sons
Total Pages: 728
Release: 2007-03-13
Genre: Science
ISBN: 0470028122

Helmut Sigel, Astrid Sigel and Roland K.O. Sigel, in close cooperation with John Wiley & Sons, launch a new Series “Metal Ions in Life Sciences”. The philosophy of the Series is based on the one successfully applied to a previous series published by another publisher, but the move from “biological systems” to “life sciences” will open the aims and scope and allow for the publication of books touching on the interface between chemistry, biology, pharmacology, biochemistry and medicine. Volume 2 focuses on the vibrant research area concerning nickel as well as its complexes and their role in Nature. With more than 2,800 references and over 130 illustrations, it is an essential resource for scientists working in the wide range from inorganic biochemistry all the way through to medicine. In 17 stimulating chapters, written by 47 internationally recognized experts, Nickel and Its Surprising Impact in Nature highlights critically the biogeochemistry of nickel, its role in the environment, in plants and cyanobacteria, as well as for the gastric pathogen Helicobacter pylori, for gene expression and carcinogenensis. In addition, it covers the complex-forming properties of nickel with amino acids, peptides, phosphates, nucleotides, and nucleic acids. The volume also provides sophisticated insights in the recent progress made in understanding the role of nickel in enzymes such as ureases, hydrogenases, superoxide dismutases, acireductone dioxygenases, acetyl-coenzyme A synthases, carbon monoxide dehydrogenases, methyl-coenzyme M reductases...and it reveals the chaperones of nickel metabolism.