Structural Analysis of Complex Networks

Structural Analysis of Complex Networks
Author: Matthias Dehmer
Publisher: Springer Science & Business Media
Total Pages: 493
Release: 2010-10-14
Genre: Mathematics
ISBN: 0817647899

Filling a gap in literature, this self-contained book presents theoretical and application-oriented results that allow for a structural exploration of complex networks. The work focuses not only on classical graph-theoretic methods, but also demonstrates the usefulness of structural graph theory as a tool for solving interdisciplinary problems. Applications to biology, chemistry, linguistics, and data analysis are emphasized. The book is suitable for a broad, interdisciplinary readership of researchers, practitioners, and graduate students in discrete mathematics, statistics, computer science, machine learning, artificial intelligence, computational and systems biology, cognitive science, computational linguistics, and mathematical chemistry. It may also be used as a supplementary textbook in graduate-level seminars on structural graph analysis, complex networks, or network-based machine learning methods.

The Structure of Complex Networks

The Structure of Complex Networks
Author: Ernesto Estrada
Publisher: Oxford University Press
Total Pages: 478
Release: 2012
Genre: Computers
ISBN: 019959175X

The book integrates approaches from mathematics, physics and computer sciences to analyse the organisation of complex networks. Every organisational principle of networks is defined, quantified and then analysed for its influences on the properties and functions of molecular, biological, ecological and social networks.

Network Analysis Literacy

Network Analysis Literacy
Author: Katharina A. Zweig
Publisher: Springer Science & Business Media
Total Pages: 546
Release: 2016-10-26
Genre: Computers
ISBN: 3709107415

This book presents a perspective of network analysis as a tool to find and quantify significant structures in the interaction patterns between different types of entities. Moreover, network analysis provides the basic means to relate these structures to properties of the entities. It has proven itself to be useful for the analysis of biological and social networks, but also for networks describing complex systems in economy, psychology, geography, and various other fields. Today, network analysis packages in the open-source platform R and other open-source software projects enable scientists from all fields to quickly apply network analytic methods to their data sets. Altogether, these applications offer such a wealth of network analytic methods that it can be overwhelming for someone just entering this field. This book provides a road map through this jungle of network analytic methods, offers advice on how to pick the best method for a given network analytic project, and how to avoid common pitfalls. It introduces the methods which are most often used to analyze complex networks, e.g., different global network measures, types of random graph models, centrality indices, and networks motifs. In addition to introducing these methods, the central focus is on network analysis literacy – the competence to decide when to use which of these methods for which type of question. Furthermore, the book intends to increase the reader's competence to read original literature on network analysis by providing a glossary and intensive translation of formal notation and mathematical symbols in everyday speech. Different aspects of network analysis literacy – understanding formal definitions, programming tasks, or the analysis of structural measures and their interpretation – are deepened in various exercises with provided solutions. This text is an excellent, if not the best starting point for all scientists who want to harness the power of network analysis for their field of expertise.

Quantitative Analysis of Ecological Networks

Quantitative Analysis of Ecological Networks
Author: Mark R. T. Dale
Publisher: Cambridge University Press
Total Pages: 250
Release: 2021-04-15
Genre: Nature
ISBN: 1108632971

Network thinking and network analysis are rapidly expanding features of ecological research. Network analysis of ecological systems include representations and modelling of the interactions in an ecosystem, in which species or factors are joined by pairwise connections. This book provides an overview of ecological network analysis including generating processes, the relationship between structure and dynamic function, and statistics and models for these networks. Starting with a general introduction to the composition of networks and their characteristics, it includes details on such topics as measures of network complexity, applications of spectral graph theory, how best to include indirect species interactions, and multilayer, multiplex and multilevel networks. Graduate students and researchers who want to develop and understand ecological networks in their research will find this volume inspiring and helpful. Detailed guidance to those already working in network ecology but looking for advice is also included.

Exploratory Social Network Analysis with Pajek

Exploratory Social Network Analysis with Pajek
Author: Wouter de Nooy
Publisher: Cambridge University Press
Total Pages: 362
Release: 2005-01-10
Genre: Mathematics
ISBN: 9780521841733

This is the first textbook on social network analysis integrating theory, applications, and professional software for performing network analysis. The book introduces the main concepts and their applications in social research with exercises. An application section explaining how to perform the network analyses with Pajek software follows each theoretical section.

Analysis of Complex Networks

Analysis of Complex Networks
Author: Matthias Dehmer
Publisher: John Wiley & Sons
Total Pages: 480
Release: 2009-07-10
Genre: Medical
ISBN: 3527627995

Mathematical problems such as graph theory problems are of increasing importance for the analysis of modelling data in biomedical research such as in systems biology, neuronal network modelling etc. This book follows a new approach of including graph theory from a mathematical perspective with specific applications of graph theory in biomedical and computational sciences. The book is written by renowned experts in the field and offers valuable background information for a wide audience.

Complex Network Analysis in Python

Complex Network Analysis in Python
Author: Dmitry Zinoviev
Publisher:
Total Pages: 233
Release: 2018-01-29
Genre: Computers
ISBN: 9781680502695

Construct, analyze, and visualize networks with networkx, a Python language module. Network analysis is a powerful tool you can apply to a multitude of datasets and situations. Discover how to work with all kinds of networks, including social, product, temporal, spatial, and semantic networks. Convert almost any real-world data into a complex network--such as recommendations on co-using cosmetic products, muddy hedge fund connections, and online friendships. Analyze and visualize the network, and make business decisions based on your analysis. If you're a curious Python programmer, a data scientist, or a CNA specialist interested in mechanizing mundane tasks, you'll increase your productivity exponentially. Complex network analysis used to be done by hand or with non-programmable network analysis tools, but not anymore! You can now automate and program these tasks in Python. Complex networks are collections of connected items, words, concepts, or people. By exploring their structure and individual elements, we can learn about their meaning, evolution, and resilience. Starting with simple networks, convert real-life and synthetic network graphs into networkx data structures. Look at more sophisticated networks and learn more powerful machinery to handle centrality calculation, blockmodeling, and clique and community detection. Get familiar with presentation-quality network visualization tools, both programmable and interactive--such as Gephi, a CNA explorer. Adapt the patterns from the case studies to your problems. Explore big networks with NetworKit, a high-performance networkx substitute. Each part in the book gives you an overview of a class of networks, includes a practical study of networkx functions and techniques, and concludes with case studies from various fields, including social networking, anthropology, marketing, and sports analytics. Combine your CNA and Python programming skills to become a better network analyst, a more accomplished data scientist, and a more versatile programmer. What You Need: You will need a Python 3.x installation with the following additional modules: Pandas (>=0.18), NumPy (>=1.10), matplotlib (>=1.5), networkx (>=1.11), python-louvain (>=0.5), NetworKit (>=3.6), and generalizesimilarity. We recommend using the Anaconda distribution that comes with all these modules, except for python-louvain, NetworKit, and generalizedsimilarity, and works on all major modern operating systems.

Fundamentals of Brain Network Analysis

Fundamentals of Brain Network Analysis
Author: Alex Fornito
Publisher: Academic Press
Total Pages: 496
Release: 2016-03-04
Genre: Medical
ISBN: 0124081185

Fundamentals of Brain Network Analysis is a comprehensive and accessible introduction to methods for unraveling the extraordinary complexity of neuronal connectivity. From the perspective of graph theory and network science, this book introduces, motivates and explains techniques for modeling brain networks as graphs of nodes connected by edges, and covers a diverse array of measures for quantifying their topological and spatial organization. It builds intuition for key concepts and methods by illustrating how they can be practically applied in diverse areas of neuroscience, ranging from the analysis of synaptic networks in the nematode worm to the characterization of large-scale human brain networks constructed with magnetic resonance imaging. This text is ideally suited to neuroscientists wanting to develop expertise in the rapidly developing field of neural connectomics, and to physical and computational scientists wanting to understand how these quantitative methods can be used to understand brain organization. - Winner of the 2017 PROSE Award in Biomedicine & Neuroscience and the 2017 British Medical Association (BMA) Award in Neurology - Extensively illustrated throughout by graphical representations of key mathematical concepts and their practical applications to analyses of nervous systems - Comprehensively covers graph theoretical analyses of structural and functional brain networks, from microscopic to macroscopic scales, using examples based on a wide variety of experimental methods in neuroscience - Designed to inform and empower scientists at all levels of experience, and from any specialist background, wanting to use modern methods of network science to understand the organization of the brain

Large Scale Structure and Dynamics of Complex Networks

Large Scale Structure and Dynamics of Complex Networks
Author: Guido Caldarelli
Publisher: World Scientific
Total Pages: 264
Release: 2007
Genre: Computers
ISBN: 9812771689

This book is the culmination of three years of research effort on a multidisciplinary project in which physicists, mathematicians, computer scientists and social scientists worked together to arrive at a unifying picture of complex networks. The contributed chapters form a reference for the various problems in data analysis visualization and modeling of complex networks.

Modularity and Dynamics on Complex Networks

Modularity and Dynamics on Complex Networks
Author: Renaud Lambiotte
Publisher: Cambridge University Press
Total Pages: 102
Release: 2022-02-03
Genre: Science
ISBN: 1108808654

Complex networks are typically not homogeneous, as they tend to display an array of structures at different scales. A feature that has attracted a lot of research is their modular organisation, i.e., networks may often be considered as being composed of certain building blocks, or modules. In this Element, the authors discuss a number of ways in which this idea of modularity can be conceptualised, focusing specifically on the interplay between modular network structure and dynamics taking place on a network. They discuss, in particular, how modular structure and symmetries may impact on network dynamics and, vice versa, how observations of such dynamics may be used to infer the modular structure. They also revisit several other notions of modularity that have been proposed for complex networks and show how these can be related to and interpreted from the point of view of dynamical processes on networks.