Analysis of flow and solute transport problem in porous media are affected by uncertainty inbuilt both in boundary conditions and spatial variability in system parameters. The experimental investigation reveals that the parameters may vary in various scales by several orders. These affect the solute plume characteristics in field-scale problem and cause uncertainty in the prediction of concentration. The main focus of the present thesis is to analyze the probabilistic behavior of solute concentration in three dimensional(3-D) heterogeneous porous media. The framework for the probabilistic analysis has been developed using perturbation approach for both spectral based analytical and finite element based numerical method. The results of the probabilistic analysis are presented either in terms of solute plume characteristics or prediction uncertainty of the concentration. After providing a brief introduction on the role of stochastic analysis in subsurface hydrology in chapter 1, a detailed review of the literature is presented to establish the existing state-of-art in the research on the probabilistic analysis of flow and transport in simple and complex heterogeneous porous media in chapter 2. The literature review is mainly focused on the methods of solution of the stochastic differential equation. Perturbation based spectral method is often used for probabilistic analysis of flow and solute transport problem. Using this analytical method a nonlocal equation is solved to derive the expression of the spatial plume moments. The spatial plume moments represent the solute movement, spreading in an average sense. In chapter 3 of the present thesis, local dispersivity if also assumed to be random space function along with hydraulic conductivity. For various correlation coefficients of the random parameters, the results in terms of the field scale effective dispersivity are presented to demonstrate the effect of local dispersivity variation in space. The randomness of local.