Sequence Analysis In A Nutshell A Guide To Tools
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Author | : Scott Markel |
Publisher | : "O'Reilly Media, Inc." |
Total Pages | : 308 |
Release | : 2003-01-27 |
Genre | : Computers |
ISBN | : 9780596004941 |
This work pulls together all of the vital information about the most commonly used databases, analytical tools, and tables used in sequence analysis.
Author | : Tore Samuelsson |
Publisher | : Cambridge University Press |
Total Pages | : 357 |
Release | : 2012-06-07 |
Genre | : Computers |
ISBN | : 1107008565 |
A hands-on introduction to Unix, Perl and other bioinformatics tools using relevant and interesting molecular biology problems.
Author | : Ian Korf |
Publisher | : "O'Reilly Media, Inc." |
Total Pages | : 363 |
Release | : 2003-07-29 |
Genre | : Computers |
ISBN | : 0596002998 |
This is the only book completely devoted to the popular BLAST (Basic Local Alignment Search Tool), and one that every biologist with an interest in sequence analysis should learn from.
Author | : Yi-Ping Phoebe Chen |
Publisher | : Springer Science & Business Media |
Total Pages | : 420 |
Release | : 2005-01-18 |
Genre | : Computers |
ISBN | : 9783540208730 |
Introductio to bioinformatics. Overview of structural bioinformatics. Database warehousing in bioinformatics. Modeling for bioinformatics. Pattern matching for motifs. Visualization and fractal analysis of biological sequences. Microarray data analysis.
Author | : Rob Sullivan |
Publisher | : Springer Science & Business Media |
Total Pages | : 644 |
Release | : 2012-01-07 |
Genre | : Science |
ISBN | : 1597452904 |
Data mining provides a set of new techniques to integrate, synthesize, and analyze tdata, uncovering the hidden patterns that exist within. Traditionally, techniques such as kernel learning methods, pattern recognition, and data mining, have been the domain of researchers in areas such as artificial intelligence, but leveraging these tools, techniques, and concepts against your data asset to identify problems early, understand interactions that exist and highlight previously unrealized relationships through the combination of these different disciplines can provide significant value for the investigator and her organization.
Author | : Marcel Raab |
Publisher | : SAGE Publications |
Total Pages | : 193 |
Release | : 2022-04-04 |
Genre | : Political Science |
ISBN | : 1071801902 |
Sequence analysis (SA) was developed to study social processes that unfold over time as sequences of events. It has gained increasing attention as the availability of longitudinal data made it possible to address sequence-oriented questions. This volume introduces the basics of SA to guide practitioners and support instructors through the basic workflow of sequence analysis. In addition to the basics, this book outlines recent advances and innovations in SA. The presentation of statistical, substantive, and theoretical foundations is enriched by examples to help the reader understand the repercussions of specific analytical choices. The extensive ancillary material supports self-learning based on real-world survey data and research questions from the field of life course research. Data and code and a variety of additional resources to enrich the use of this book are available on an accompanying website.
Author | : Darryl Leon |
Publisher | : CRC Press |
Total Pages | : 510 |
Release | : 2006-06-13 |
Genre | : Medical |
ISBN | : 1420015737 |
The pharmaceutical industry relies on numerous well-designed experiments involving high-throughput techniques and in silico approaches to analyze potential drug targets. These in silico methods are often predictive, yielding faster and less expensive analyses than traditional in vivo or in vitro procedures. In Silico Technologies in Drug Target Ide
Author | : Richard Durbin |
Publisher | : Cambridge University Press |
Total Pages | : 372 |
Release | : 1998-04-23 |
Genre | : Science |
ISBN | : 113945739X |
Probabilistic models are becoming increasingly important in analysing the huge amount of data being produced by large-scale DNA-sequencing efforts such as the Human Genome Project. For example, hidden Markov models are used for analysing biological sequences, linguistic-grammar-based probabilistic models for identifying RNA secondary structure, and probabilistic evolutionary models for inferring phylogenies of sequences from different organisms. This book gives a unified, up-to-date and self-contained account, with a Bayesian slant, of such methods, and more generally to probabilistic methods of sequence analysis. Written by an interdisciplinary team of authors, it aims to be accessible to molecular biologists, computer scientists, and mathematicians with no formal knowledge of the other fields, and at the same time present the state-of-the-art in this new and highly important field.
Author | : Melissa A Hardy |
Publisher | : SAGE |
Total Pages | : 729 |
Release | : 2009-06-17 |
Genre | : Social Science |
ISBN | : 1446203441 |
′This book provides an excellent reference guide to basic theoretical arguments, practical quantitative techniques and the methodologies that the majority of social science researchers are likely to require for postgraduate study and beyond′ - Environment and Planning ′The book provides researchers with guidance in, and examples of, both quantitative and qualitative modes of analysis, written by leading practitioners in the field. The editors give a persuasive account of the commonalities of purpose that exist across both modes, as well as demonstrating a keen awareness of the different things that each offers the practising researcher′ - Clive Seale, Brunel University ′With the appearance of this handbook, data analysts no longer have to consult dozens of disparate publications to carry out their work. The essential tools for an intelligent telling of the data story are offered here, in thirty chapters written by recognized experts. ′ - Michael Lewis-Beck, F Wendell Miller Distinguished Professor of Political Science, University of Iowa ′This is an excellent guide to current issues in the analysis of social science data. I recommend it to anyone who is looking for authoritative introductions to the state of the art. Each chapter offers a comprehensive review and an extensive bibliography and will be invaluable to researchers wanting to update themselves about modern developments′ - Professor Nigel Gilbert, Pro Vice-Chancellor and Professor of Sociology, University of Surrey This is a book that will rapidly be recognized as the bible for social researchers. It provides a first-class, reliable guide to the basic issues in data analysis, such as the construction of variables, the characterization of distributions and the notions of inference. Scholars and students can turn to it for teaching and applied needs with confidence. The book also seeks to enhance debate in the field by tackling more advanced topics such as models of change, causality, panel models and network analysis. Specialists will find much food for thought in these chapters. A distinctive feature of the book is the breadth of coverage. No other book provides a better one-stop survey of the field of data analysis. In 30 specially commissioned chapters the editors aim to encourage readers to develop an appreciation of the range of analytic options available, so they can choose a research problem and then develop a suitable approach to data analysis.
Author | : Eugene V. Koonin |
Publisher | : Springer Science & Business Media |
Total Pages | : 482 |
Release | : 2013-06-29 |
Genre | : Science |
ISBN | : 1475737831 |
Sequence - Evolution - Function is an introduction to the computational approaches that play a critical role in the emerging new branch of biology known as functional genomics. The book provides the reader with an understanding of the principles and approaches of functional genomics and of the potential and limitations of computational and experimental approaches to genome analysis. Sequence - Evolution - Function should help bridge the "digital divide" between biologists and computer scientists, allowing biologists to better grasp the peculiarities of the emerging field of Genome Biology and to learn how to benefit from the enormous amount of sequence data available in the public databases. The book is non-technical with respect to the computer methods for genome analysis and discusses these methods from the user's viewpoint, without addressing mathematical and algorithmic details. Prior practical familiarity with the basic methods for sequence analysis is a major advantage, but a reader without such experience will be able to use the book as an introduction to these methods. This book is perfect for introductory level courses in computational methods for comparative and functional genomics.