Ranaviruses

Ranaviruses
Author: Matthew J. Gray
Publisher: Springer
Total Pages: 246
Release: 2015-05-01
Genre: Science
ISBN: 9783319137568

This is the first book on ranaviruses. Ranaviruses are double-stranded DNA viruses that cause hemorrhagic disease in amphibians, reptiles, and fish. They have caused mass die-offs of ectothermic vertebrates in wild and captive populations around the globe. There is evidence that this pathogen is emerging and responsible for population declines in certain locations. Considering that amphibians and freshwater turtles are suitable hosts and the most imperiled vertebrate taxa in the world, ranaviruses can have significant impacts on biodiversity and ecosystem function. Additionally, many fish that are raised in aquaculture facilities and traded internationally are suitable hosts; thus, the potential economic impact of ranaviruses is significant. Ranaviruses also serve as a model for replication and gene function of large double-stranded DNA viruses. There is an urgent need to assemble the contemporary information on ranaviruses and provide guidance on how to assess their threats in populations. Through the Global Ranavirus Consortium, 24 experts from six countries were organize to write this volume, the first book on ranaviruses. The book begins with a discussion on the global extent of ranaviruses, case histories of infection and disease in ectothermic vertebrates, and current phylogeny. Basic principles of ranavirus ecology and evolution are covered next, with a focus on host-pathogen interactions and how the virus emerges in its environment. There are two chapters that will discuss the molecular biology of ranaviruses, host response to infection, and the genes responsible for immune system evasion. One chapter establishes standards for testing for infection and diagnosing ranaviral disease. The book ends by providing guidance on how to design ranavirus surveillance studies and analyze data to determine risk, and discussing the role of the Global Ranavirus Consortium in organizing research and outreach activities.

Ranaviruses

Ranaviruses
Author: Matthew J. Gray
Publisher: Springer
Total Pages: 254
Release: 2015-04-27
Genre: Science
ISBN: 3319137557

This is the first book on ranaviruses. Ranaviruses are double-stranded DNA viruses that cause hemorrhagic disease in amphibians, reptiles, and fish. They have caused mass die-offs of ectothermic vertebrates in wild and captive populations around the globe. There is evidence that this pathogen is emerging and responsible for population declines in certain locations. Considering that amphibians and freshwater turtles are suitable hosts and the most imperiled vertebrate taxa in the world, ranaviruses can have significant impacts on biodiversity and ecosystem function. Additionally, many fish that are raised in aquaculture facilities and traded internationally are suitable hosts; thus, the potential economic impact of ranaviruses is significant. Ranaviruses also serve as a model for replication and gene function of large double-stranded DNA viruses. There is an urgent need to assemble the contemporary information on ranaviruses and provide guidance on how to assess their threats in populations. Through the Global Ranavirus Consortium, 24 experts from six countries were organize to write this volume, the first book on ranaviruses. The book begins with a discussion on the global extent of ranaviruses, case histories of infection and disease in ectothermic vertebrates, and current phylogeny. Basic principles of ranavirus ecology and evolution are covered next, with a focus on host-pathogen interactions and how the virus emerges in its environment. There are two chapters that will discuss the molecular biology of ranaviruses, host response to infection, and the genes responsible for immune system evasion. One chapter establishes standards for testing for infection and diagnosing ranaviral disease. The book ends by providing guidance on how to design ranavirus surveillance studies and analyze data to determine risk, and discussing the role of the Global Ranavirus Consortium in organizing research and outreach activities.

Ranaviruses

Ranaviruses
Author: Matthew J. Gray
Publisher: Springer
Total Pages: 0
Release: 2024-10-20
Genre: Science
ISBN: 9783031649721

This is a open access book. Ranaviruses, double-stranded DNA viruses (family Iridoviridae) that cause systemic, life-threatening disease in a variety of amphibians, reptiles and fish, have contributed to mass die-offs of both wild and captive populations around the globe. These viruses are emerging and increasingly responsible for population declines of ectothermic vertebrates. Because amphibians, reptiles, and freshwater turtles are suitable hosts and among the most imperiled vertebrate taxa in the world, ranaviruses can have significant impacts on biodiversity and ecosystem function. Additionally, many fish that are raised in aquaculture facilities and traded internationally are suitable hosts; thus, the potential economic impact of ranaviruses is significant. Ranaviruses also serve as a model for understanding viral replication and gene function among large double-stranded DNA viruses, e.g., poxviruses, asfarvirus, and ascoviruses. Lastly, study of the host immune response to ranaviral disease and the identification of viral immune evasion genes that negatively regulate host immune functions provide insight into which specific immune elements are most important in protecting host species against severe disease. The effort to produce a 2nd edition of our earlier work grew out of a recent meeting (1st Global Amphibian and Reptile Disease Conference) held in August 2022. Given the continued research in ranaviruses and ranaviral disease since the first edition, this new book updates the latest information on ranaviruses and provides guidance on how to monitor and manage ranaviruses in cold-blooded vertebrate populations.

Emerging Epizootic Diseases of Amphibians and Fish

Emerging Epizootic Diseases of Amphibians and Fish
Author: Audrey Jeanine Abrams McLean
Publisher:
Total Pages: 208
Release: 2013
Genre:
ISBN:

Ranaviruses are large dsDNA viruses that are considered emerging pathogens, and they are known to cause mortality events in amphibian and fish populations. This research utilizes experimental and genomic data to elucidate the mechanisms driving the evolution and spread of ranaviruses, with a focus on host switching within the genus. In Chapter 1, we utilize virus challenge assays to examine potential transfer of ranaviruses between cultured juvenile largemouth bass (M. salmoides) and bullfrog tadpoles (Rana catesbeiana). Additionally, a commonly used antiparasitic treatment containing malachite green and formalin (MGF) was utilized to suppress the immune system of largemouth bass to assess the susceptibility of immunocompromised fish to ranaviruses. The results indicate that tadpoles are not susceptible to Largemouth Bass Virus (LMBV), but that bass are susceptible to ranaviruses isolated from amphibians. Furthermore, immunocompromised fish were more susceptible to both LMBV and FV3 infections than immunocompetent fish. In Chapter 2, we used eight sequenced ranavirus genomes and two selection-detection methods (site-based and branch-based) to identify genes that exhibited signatures of positive selection, potentially due to the selective pressures at play during host switching. We found evidence of positive selection acting on four genes via the site-based method, three of which are newly-acquired genes unique to ranavirus genomes. Our results suggest that the group of newly acquired genes in the ranavirus genome may have undergone recent adaptive changes that have facilitated interspecies and interclass host switching. In Chapter 3, we annotated and analyzed the nearly complete genomic sequence of LMBV to determine its taxonomic classification. The available genomic content and phylogenetic evidence suggests that LMBV is more closely related to amphibian-like ranaviruses (ALRVs) than grouper ranaviruses, and this is further supported by greater genomic collinearity between LMBV and ALRVs. This data suggests that the classification of LMBV as a ranavirus is warranted. The results presented here will help to clarify the taxonomic relationships of ranaviruses, and will also be useful in developing management strategies to limit interspecific and intraspecific viral spread. The information garnered from this research will have far-reaching implications in studies of amphibian conservation, disease evolution, and virology.

Origin and Evolution of Viruses

Origin and Evolution of Viruses
Author: Esteban Domingo
Publisher: Elsevier
Total Pages: 573
Release: 2008-06-23
Genre: Science
ISBN: 0080564968

New viral diseases are emerging continuously. Viruses adapt to new environments at astounding rates. Genetic variability of viruses jeopardizes vaccine efficacy. For many viruses mutants resistant to antiviral agents or host immune responses arise readily, for example, with HIV and influenza. These variations are all of utmost importance for human and animal health as they have prevented us from controlling these epidemic pathogens. This book focuses on the mechanisms that viruses use to evolve, survive and cause disease in their hosts. Covering human, animal, plant and bacterial viruses, it provides both the basic foundations for the evolutionary dynamics of viruses and specific examples of emerging diseases. NEW - methods to establish relationships among viruses and the mechanisms that affect virus evolution UNIQUE - combines theoretical concepts in evolution with detailed analyses of the evolution of important virus groups SPECIFIC - Bacterial, plant, animal and human viruses are compared regarding their interation with their hosts

Mechanisms Contributing to the Emergence of Ranavirus in Ectothermic Vertebrate Communities

Mechanisms Contributing to the Emergence of Ranavirus in Ectothermic Vertebrate Communities
Author: Roberto Brenes
Publisher:
Total Pages: 145
Release: 2013
Genre: Amphibian declines
ISBN:

Ranaviruses have been linked to amphibian die-off events in ectothermic vertebrates worldwide. Differences in susceptibility and capacity of transmission among and within classes are poorly understood. My goal was to determine possible mechanisms influencing susceptibility to ranavirus infection in amphibian species and other aquatic vertebrate taxa, as well as the capacity of transmission between classes and the effects of amphibian community composition on ranavirus transmission. I tested 16 amphibian species from USA, Europe, and the pet trade, expanding an existing database developed by the Center for Wildlife Health to 35 amphibian species from 9 families. I also tested the susceptibility of 5 fish and 3 turtle species by exposure to a panel of ranaviruses from amphibian, fish and reptilian hosts under laboratory conditions. I used outdoor aquatic mesocosms to explore if certain species functioned as amplification hosts in a semi-natural environment. All vertebrate classes tested (amphibian, reptile, and fish) presented variability in susceptibility. Amphibians were most susceptible to ranavirus, but no phylogenetic relationship with susceptibility was detected. Susceptibility was related to life history characteristics of amphibian hosts. Fast-developing species that bred in temporary wetlands during spring showed higher susceptibility to ranavirus. Further, for one of the isolates, pathogenicity increased as distance between host population and isolate location increased. Fish and turtle species showed low susceptibility to ranavirus, but could function as reservoirs for ranavirus due to documentation of subclinical infections. Transmission experiments demonstrated that ranavirus could be transmitted between classes, with greatest mortality when infected turtles or fish transmitted the virus to amphibians. Finally, I showed that community composition affects ranavirus transmission and mortality in larval amphibians. Wood frog larvae functioned as amplification hosts to spotted salamander (Ambystoma maculatum) and caused an outbreak in chorus frog (Pseudacris feriarum). My results demonstrate that ranaviruses can infect multiple hosts from different classes with different susceptibilities, contributing to its persistence in the environment and recurrent outbreaks. My results can be used to identify potential species of high risk to ranaviral disease and highlight the need to understand host community to predict ranavirus outbreaks and develop conservation strategies to mitigate emergence of ranaviral disease.

Virus Taxonomy

Virus Taxonomy
Author: International Committee on Taxonomy of Viruses
Publisher: Elsevier
Total Pages: 1463
Release: 2011-10-25
Genre: Science
ISBN: 0123846846

The practical need to partition the world of viruses into distinguishable, universally agreed upon entities is the ultimate justification for developing a virus classification system. Since 1971, the International Committee on Taxonomy of Viruses (ICTV) operating on behalf of the world community of virologists has taken on the task of developing a single, universal taxonomic scheme for all viruses infecting animals (vertebrate, invertebrates, and protozoa), plants (higher plants and algae), fungi, bacteria, and archaea. The current report builds on the accumulated taxonomic construction of the eight previous reports dating back to 1971 and records the proceedings of the Committee since publication of the last report in 2005. Representing the work of more than 500 virologists worldwide, this report is the authoritative reference for virus organization, distinction, and structure.

Evolution and Ecology of an Amphibian Emerging Infectious Disease

Evolution and Ecology of an Amphibian Emerging Infectious Disease
Author: Pierre Echaubard
Publisher:
Total Pages:
Release: 2012
Genre:
ISBN:

Host-pathogen investigations have conceptually evolved during the last two decades, from a basic and descriptive approach to a current hypothesis-driven and a more theoretical discipline shaped by evolutionary biology. Our deeper understanding of the elements influencing the mutual selective pressures that the host and the pathogens exert on each other, together with recent conceptual advances, currently position this field of research at the frontier between ecology and evolution. Recent theoretical considerations define hostpathogens systems as an evo-eco mosaic comprised of evolutionary and ecological attributes in turn underlying the context-dependent nature of the system dynamic. Therefore, investigations of host-pathogen interactions should integrate the diversity of the systems drivers by using an integrative approach in order to elucidate both coevolutionary trajectory and epidemiological dynamic of the system. In this thesis, such a framework is used to investigate Amphibian/ranavirus interactions. Ranaviruses are emerging pathogens known to have caused amphibian die-offs on five continents with the greatest number of reported mortality events documented in North America and Europe. Despite an increasing understanding of ranaviral disease properties, ranavirus disease dynamics in the environment remain poorly understood. For instance, the influence of potential abiotic and biotic mechanisms including temperature, local landscape features, larval developmental stages, host density and genetic variability as well as genotypic interactions between the host and the pathogen has on the prevalence and virulence of the virus remains to be elucidated. In order to improve our knowledge regarding these specific determinants of ranaviral disease, I designed a combination of manipulative laboratory experiments and a field mensurative survey using the ranid amphibian Lithobates (Rana) pipiens as the host model for this system. I observed that populations of amphibian hosts inhabiting urbanized landscapes suffered from significant decline in genetic diversity in turn promoting the accrued infection by the ranavirus (manuscript 1). Complementary analysis using two amphibian host species, L.pipiens and L.sylvaticus, and three ranavirus strains revealed significant variation among hosts for their susceptibility to ranavirus, and significant variation among ranavirus strains for infectivity. I also showed that specific amphibian/ranavirus interactions might have a tighter coevolutionary history than other combinations, resulting in sharper mutual coadaptations and the potential for frequency-dependent selection to operate in this system. However, the coevolutionary trajectories in this host-pathogen system are dependent on the temperature conditions in which the interaction takes place. Amphibian/ranavirus interactions outcomes iv are therefore temperature, host, and pathogen genotype-dependent suggesting that the range of infection outcomes in this system is potentially large (manuscript 2). Further, I observed that increasing animal holding density is detrimental for host fitness as mortality rate is higher, day of death earlier, development longer, and growth rate significantly lower when tadpoles are experimentally exposed to ranavirus in high holding density situations. These results paralleled a linear increase of detrimental effects when ranavirus doses increased in low density conditions, with control tadpoles having a significantly higher overall relative fitness. However, this pattern was not observed in high density conditions, where the effects of increasing ranavirus dose were limited, revealing non-trivial density-dependence of virulence expression (manuscript 3). Finally, ranavirus infection rate varied with the host developmental stage as the host immune system clears the infection over the course of individual host development. However the intensity of the clearing depends on both the timing and number of ranavirus exposures (manuscript 4). Overall the results described in my thesis suggest that ranavirus virulence depends on a diversity of ecological, epidemiological, and evolutionary determinants. The underlying complexity of ranavirus.

Evaluation of a Novel Detection Method for Ranavirus in Water Samples from Pine Mountain Wildlife Management Area, Letcher County, Kentucky

Evaluation of a Novel Detection Method for Ranavirus in Water Samples from Pine Mountain Wildlife Management Area, Letcher County, Kentucky
Author: Matthew R. Pettus
Publisher:
Total Pages: 76
Release: 2010
Genre: Amphibians
ISBN:

Throughout the world amphibian populations have declined over the last ten years. Many factors have been implicated, yet emerging diseases are currently having the largest effects on amphibian populations. This research was intended to develop a protocol using water samples to detect Ranavirus, a recently emerging infectious agent, from environmental water samples at Pine Mountain Wildlife Management Area in Letcher County, Kentucky. Ranaviruses are dsDNA viruses that have been implicated in localized amphibian declines. Possible reservoirs for Ranaviruses include adult amphibians, reptiles, and fishes. Direct transmission has been well documented and indirect transmission is highly possible. Centrifugal filters were used to concentrate water samples from a volume of 15 ml down to 200 (chemistry symbol) l. PCR was performed on the concentrated water samples and PCR products were separated using 1% agarose gel electrophoresis. Tissue samples from animals living in each pond were also taken for comparison to the water samples. Total samples obtained included 38 water samples and 98 tissue samples. All of the samples tested negative for Ranavirus. To determine the lowest concentration of virus detectable by this novel system, double distilled water (ddH2O) and pond water was seeded with Ranavirus at a known concentration. This system could detect 13.3 PFU/ (chemistry symbol) l in ddH2O and 106.4 PFU/ (chemistry symbol) l in pond water. While there may have been several factors involved in this result, it is most likely that during the sampling period Ranavirus was not present in the Pine Mountain Wildlife Management Area.