Protein Targeting Protocols

Protein Targeting Protocols
Author: Roger A. Clegg
Publisher: Springer Science & Business Media
Total Pages: 331
Release: 2008-02-04
Genre: Science
ISBN: 1592595723

It is by no means a revelation that proteins are not uniformly distributed throughout the cell. As a result, the idea that protein molecules, because of the specificity with which they can engage in interactions with other proteins, may be aimed—via these interactions—at a restricted target, is a fundamental one in contemporary molecular life sciences. The target may be variously c- ceived as a specific molecule, a group of molecules, a structure, or a more generic type of intracellular environment. Because the concept of protein targeting is intuitive rather than expl- itly defined, it has been variously used by different groups of researchers in cell biology, biochemistry, and molecular biology. For those working in the field of intracellular signaling, an influential introduction to the topic was the seminal article by Hubbard & Cohen (TIBS [1993] 18, 172–177), which was based on the work of Cohen’s laboratory on protein phosphatases. Sub- quently, the ideas that they discussed have been further developed and extended by many workers to other key intermediaries in intracellular sign- ing, including protein kinases and a great variety of modulator and adaptor proteins.

Targeted Protein Degradation

Targeted Protein Degradation
Author: Angela M. Cacace
Publisher: Humana
Total Pages: 351
Release: 2021-08-26
Genre: Science
ISBN: 9781071616642

This volume contains a collection of innovative techniques for studying targeted protein degradation. Chapters guide readers through heterobifunctional proteolysis-targeting chimeras (PROTACs) approaches, E3 ligase, E3 ligase-induced ubiquitylation, proteomic approaches, novel degrader molecules, molecular glue, and stabilize binding interaction between a target and E3 ubiquitin ligase. Written in the format of the highly successful Methods in Molecular Biology series, each chapter includes an introduction to the topic, lists necessary materials and reagents, includes tips on troubleshooting and known pitfalls, and step-by-step, readily reproducible protocols. Authoritative and cutting-edge, Targeted Protein Degradation: Methods and Protocols aims to ensure successful results in this emerging field of drug discovery.

Glycovirology Protocols

Glycovirology Protocols
Author: Richard J. Sugrue
Publisher: Springer Science & Business Media
Total Pages: 426
Release: 2008-01-18
Genre: Medical
ISBN: 1597453935

This volume reviews the increasing importance of glycosylation to the field of virology, as well as virus replication. The chapters provide an overview of glycosylation in relation to virus infection, and the generic techniques that are used to analyze and characterize glycoproteins. The information presented here provides insight as to how the techniques of glycobiology can be applied in virology and answer most questions that are of interest to the reader.

Circadian Rhythms

Circadian Rhythms
Author: Ezio Rosato
Publisher: Springer Science & Business Media
Total Pages: 557
Release: 2008-02-04
Genre: Science
ISBN: 1597452572

This is an in-depth examination of circadian biology, presented by leading researchers in the field. Methods for analysis of rhythmic readouts in select model organisms are included. This cutting-edge collection of protocols is adaptable for research at every level, and represents the huge strides that chronobiologists have made over the past two decades. Circadian biologists at all research levels will realize tremendous benefit from this extraordinary collection.

Cardiovascular Proteomics

Cardiovascular Proteomics
Author: Fernando Vivanco
Publisher: Springer Science & Business Media
Total Pages: 412
Release: 2008-02-05
Genre: Science
ISBN: 1597452149

This cutting-edge book presents protocols and strategies for proteomic evaluation of cardiovascular disease written by pioneering researchers in the field. Topics explored in this comprehensive volume include obtaining specific heart proteins, techniques for identifying risk biomarkers of atherome plaque rupture, analyzing the secretome of explanted endarterectomies cultured in vitro, and phage display techniques for deciphering the molecular diversity of blood vessels.

Plant-Pathogen Interactions

Plant-Pathogen Interactions
Author: Pamela C. Ronald
Publisher: Springer Science & Business Media
Total Pages: 253
Release: 2008-02-04
Genre: Science
ISBN: 1592599664

This book provides key methods, approaches, and strategies to dissect the plant defense response. Addressing methods to identify and characterize plant resistance genes as well as pathogen-associated molecules that trigger the plant defense response, this volume creates a better understanding of the interactions between pathogens and their hosts. This will help to develop better methods for disease control in plants and animals.

Quantitative Proteomics by Mass Spectrometry

Quantitative Proteomics by Mass Spectrometry
Author: Salvatore Sechi
Publisher: Springer Science & Business Media
Total Pages: 223
Release: 2008-02-05
Genre: Science
ISBN: 1597452556

This volume is a compendium of cutting-edge protocols for quantitative proteomics, and presents the most significant methods used in the field today. The focus on mass spectrometry (MS) is integral. Attention is given to state-of-the-art techniques for the characterization of the phosphoproteome and tandem MS for detection of inborn errors of metabolism. This volume is an indispensable resource in the search for novel biomarkers.

Mass Spectrometry of Proteins and Peptides

Mass Spectrometry of Proteins and Peptides
Author: John R. Chapman
Publisher: Springer Science & Business Media
Total Pages: 539
Release: 2008-02-05
Genre: Science
ISBN: 1592590454

Little more than three years down the line and I am already writing the Preface to a second volume to follow Protein and Peptide Analysis by Mass . What has happened in between these times to make this second venture worthwhile? New types of mass spectrometric instrumentation have appeared so that new techniques have become possible and existing techniques have become much more feasible. More particularly, however, the newer ionization te- niques, introduced for the analysis of high molecular weight materials, have now been thoroughly used and studied. As a result, there has been an en- mous improvement in the associated sample handling technology so that these methods are now routinely applied to much smaller sample amounts as well as to more intractable samples. Again, this particular community of mass spectrometry users has both increased in number and diversified. And, riding this wave of acceptance, leaders in the field have set their sights on more complex problems: molecular interaction, ion structures, quantitation, and kinetics are just a few of the newer areas reported in Mass Spectrometry of Proteins and Peptides. As with the first volume, one purpose of this collection, Mass Spectr- etry of Proteins and Peptides, is to show the reader what can be done by the application of mass spectrometry, and perhaps even to encourage the reader to venture down new paths.

Chaperonin Protocols

Chaperonin Protocols
Author: Christine Schneider
Publisher: Springer Science & Business Media
Total Pages: 212
Release: 2008-02-05
Genre: Science
ISBN: 1592590616

Complement Methods and Protocols

Complement Methods and Protocols
Author: B. Paul Morgan
Publisher: Springer Science & Business Media
Total Pages: 268
Release: 2008-02-05
Genre: Medical
ISBN: 159259056X

The complement system, first described more than a century ago, was for many years the ugly duckling of the immunology world, but no more. Complement in recent years has blossomed into a fascinating and fast moving field of immediate relevance to clinical scientists in fields as diverse as transplantation biology, virology, and inflammation. Despite its emergence from the shadows, complement retains an unwarranted reputation for being “difficult.” This impression derives in large part from the superficially complicated nomenclature, a relic of the long and tortuous process of unraveling the system, of naming components in order of discovery rather than in a syst- atic manner. Once the barrier of nomenclature has been surmounted, then the true simplicity of the system becomes apparent. Complement comprises an activation system and a cytolytic system. The former has diverged to focus on complement to distinct targets—bacteria, - mune complexes, and others—so that texts now describe three activation pa- ways, closely related to one another, but each with some unique features. The cytolytic pathway is the same regardless of the activation process and kills cells by creating pores in the membrane. Complement plays an important role in killing bacteria and is essential for the proper handling of immune complexes. Problems occur when complement is activated in an inappropriate manner—the potent inflammation-inducing products of the cascade then cause unwanted tissue damage and destruction.