NumPy Cookbook

NumPy Cookbook
Author: Ivan Idris
Publisher: Packt Publishing Ltd
Total Pages: 357
Release: 2012-10-25
Genre: Computers
ISBN: 1849518939

Written in Cookbook style, the code examples will take your Numpy skills to the next level. This book will take Python developers with basic Numpy skills to the next level through some practical recipes.

NumPy Cookbook

NumPy Cookbook
Author: Ivan Idris
Publisher: Packt Publishing Ltd
Total Pages: 357
Release: 2012-10-25
Genre: Computers
ISBN: 1849518939

Written in Cookbook style, the code examples will take your Numpy skills to the next level. This book will take Python developers with basic Numpy skills to the next level through some practical recipes.

Learning NumPy Array

Learning NumPy Array
Author: Ivan Idris
Publisher: Packt Publishing Ltd
Total Pages: 254
Release: 2014-06-13
Genre: Computers
ISBN: 1783983914

A step-by-step guide, packed with examples of practical numerical analysis that will give you a comprehensive, but concise overview of NumPy. This book is for programmers, scientists, or engineers, who have basic Python knowledge and would like to be able to do numerical computations with Python.

Python Cookbook

Python Cookbook
Author: David Beazley
Publisher: "O'Reilly Media, Inc."
Total Pages: 706
Release: 2013-05-10
Genre: Computers
ISBN: 1449357369

If you need help writing programs in Python 3, or want to update older Python 2 code, this book is just the ticket. Packed with practical recipes written and tested with Python 3.3, this unique cookbook is for experienced Python programmers who want to focus on modern tools and idioms. Inside, youâ??ll find complete recipes for more than a dozen topics, covering the core Python language as well as tasks common to a wide variety of application domains. Each recipe contains code samples you can use in your projects right away, along with a discussion about how and why the solution works. Topics include: Data Structures and Algorithms Strings and Text Numbers, Dates, and Times Iterators and Generators Files and I/O Data Encoding and Processing Functions Classes and Objects Metaprogramming Modules and Packages Network and Web Programming Concurrency Utility Scripting and System Administration Testing, Debugging, and Exceptions C Extensions

Python Data Analysis Cookbook

Python Data Analysis Cookbook
Author: Ivan Idris
Publisher: Packt Publishing Ltd
Total Pages: 462
Release: 2016-07-22
Genre: Computers
ISBN: 1785283855

Over 140 practical recipes to help you make sense of your data with ease and build production-ready data apps About This Book Analyze Big Data sets, create attractive visualizations, and manipulate and process various data types Packed with rich recipes to help you learn and explore amazing algorithms for statistics and machine learning Authored by Ivan Idris, expert in python programming and proud author of eight highly reviewed books Who This Book Is For This book teaches Python data analysis at an intermediate level with the goal of transforming you from journeyman to master. Basic Python and data analysis skills and affinity are assumed. What You Will Learn Set up reproducible data analysis Clean and transform data Apply advanced statistical analysis Create attractive data visualizations Web scrape and work with databases, Hadoop, and Spark Analyze images and time series data Mine text and analyze social networks Use machine learning and evaluate the results Take advantage of parallelism and concurrency In Detail Data analysis is a rapidly evolving field and Python is a multi-paradigm programming language suitable for object-oriented application development and functional design patterns. As Python offers a range of tools and libraries for all purposes, it has slowly evolved as the primary language for data science, including topics on: data analysis, visualization, and machine learning. Python Data Analysis Cookbook focuses on reproducibility and creating production-ready systems. You will start with recipes that set the foundation for data analysis with libraries such as matplotlib, NumPy, and pandas. You will learn to create visualizations by choosing color maps and palettes then dive into statistical data analysis using distribution algorithms and correlations. You'll then help you find your way around different data and numerical problems, get to grips with Spark and HDFS, and then set up migration scripts for web mining. In this book, you will dive deeper into recipes on spectral analysis, smoothing, and bootstrapping methods. Moving on, you will learn to rank stocks and check market efficiency, then work with metrics and clusters. You will achieve parallelism to improve system performance by using multiple threads and speeding up your code. By the end of the book, you will be capable of handling various data analysis techniques in Python and devising solutions for problem scenarios. Style and Approach The book is written in “cookbook” style striving for high realism in data analysis. Through the recipe-based format, you can read each recipe separately as required and immediately apply the knowledge gained.

Bioinformatics with Python Cookbook

Bioinformatics with Python Cookbook
Author: Tiago Antao
Publisher: Packt Publishing Ltd
Total Pages: 360
Release: 2022-09-27
Genre: Computers
ISBN: 180324772X

Discover modern, next-generation sequencing libraries from the powerful Python ecosystem to perform cutting-edge research and analyze large amounts of biological data Key Features Perform complex bioinformatics analysis using the most essential Python libraries and applications Implement next-generation sequencing, metagenomics, automating analysis, population genetics, and much more Explore various statistical and machine learning techniques for bioinformatics data analysis Book Description Bioinformatics is an active research field that uses a range of simple-to-advanced computations to extract valuable information from biological data, and this book will show you how to manage these tasks using Python. This updated third edition of the Bioinformatics with Python Cookbook begins with a quick overview of the various tools and libraries in the Python ecosystem that will help you convert, analyze, and visualize biological datasets. Next, you'll cover key techniques for next-generation sequencing, single-cell analysis, genomics, metagenomics, population genetics, phylogenetics, and proteomics with the help of real-world examples. You'll learn how to work with important pipeline systems, such as Galaxy servers and Snakemake, and understand the various modules in Python for functional and asynchronous programming. This book will also help you explore topics such as SNP discovery using statistical approaches under high-performance computing frameworks, including Dask and Spark. In addition to this, you'll explore the application of machine learning algorithms in bioinformatics. By the end of this bioinformatics Python book, you'll be equipped with the knowledge you need to implement the latest programming techniques and frameworks, empowering you to deal with bioinformatics data on every scale. What you will learn Become well-versed with data processing libraries such as NumPy, pandas, arrow, and zarr in the context of bioinformatic analysis Interact with genomic databases Solve real-world problems in the fields of population genetics, phylogenetics, and proteomics Build bioinformatics pipelines using a Galaxy server and Snakemake Work with functools and itertools for functional programming Perform parallel processing with Dask on biological data Explore principal component analysis (PCA) techniques with scikit-learn Who this book is for This book is for bioinformatics analysts, data scientists, computational biologists, researchers, and Python developers who want to address intermediate-to-advanced biological and bioinformatics problems. Working knowledge of the Python programming language is expected. Basic knowledge of biology will also be helpful.

IPython Interactive Computing and Visualization Cookbook

IPython Interactive Computing and Visualization Cookbook
Author: Cyrille Rossant
Publisher: Packt Publishing Ltd
Total Pages: 548
Release: 2018-01-31
Genre: Computers
ISBN: 1785881930

Learn to use IPython and Jupyter Notebook for your data analysis and visualization work. Key Features Leverage the Jupyter Notebook for interactive data science and visualization Become an expert in high-performance computing and visualization for data analysis and scientific modeling A comprehensive coverage of scientific computing through many hands-on, example-driven recipes with detailed, step-by-step explanations Book Description Python is one of the leading open source platforms for data science and numerical computing. IPython and the associated Jupyter Notebook offer efficient interfaces to Python for data analysis and interactive visualization, and they constitute an ideal gateway to the platform. IPython Interactive Computing and Visualization Cookbook, Second Edition contains many ready-to-use, focused recipes for high-performance scientific computing and data analysis, from the latest IPython/Jupyter features to the most advanced tricks, to help you write better and faster code. You will apply these state-of-the-art methods to various real-world examples, illustrating topics in applied mathematics, scientific modeling, and machine learning. The first part of the book covers programming techniques: code quality and reproducibility, code optimization, high-performance computing through just-in-time compilation, parallel computing, and graphics card programming. The second part tackles data science, statistics, machine learning, signal and image processing, dynamical systems, and pure and applied mathematics. What you will learn Master all features of the Jupyter Notebook Code better: write high-quality, readable, and well-tested programs; profile and optimize your code; and conduct reproducible interactive computing experiments Visualize data and create interactive plots in the Jupyter Notebook Write blazingly fast Python programs with NumPy, ctypes, Numba, Cython, OpenMP, GPU programming (CUDA), parallel IPython, Dask, and more Analyze data with Bayesian or frequentist statistics (Pandas, PyMC, and R), and learn from actual data through machine learning (scikit-learn) Gain valuable insights into signals, images, and sounds with SciPy, scikit-image, and OpenCV Simulate deterministic and stochastic dynamical systems in Python Familiarize yourself with math in Python using SymPy and Sage: algebra, analysis, logic, graphs, geometry, and probability theory Who this book is for This book is intended for anyone interested in numerical computing and data science: students, researchers, teachers, engineers, analysts, and hobbyists. A basic knowledge of Python/NumPy is recommended. Some skills in mathematics will help you understand the theory behind the computational methods.

NumPy: Beginner's Guide

NumPy: Beginner's Guide
Author: Ivan Idris
Publisher: Packt Publishing Ltd
Total Pages: 348
Release: 2015-06-24
Genre: Computers
ISBN: 1785288830

In today's world of science and technology, it's all about speed and flexibility. When it comes to scientific computing, NumPy tops the list. NumPy will give you both speed and high productivity. This book will walk you through NumPy with clear, step-by-step examples and just the right amount of theory. The book focuses on the fundamentals of NumPy, including array objects, functions, and matrices, each of them explained with practical examples. You will then learn about different NumPy modules while performing mathematical operations such as calculating the Fourier transform, finding the inverse of a matrix, and determining eigenvalues, among many others. This book is a one-stop solution to knowing the ins and outs of the vast NumPy library, empowering you to use its wide range of mathematical features to build efficient, high-speed programs.

NumPy: Beginner's Guide

NumPy: Beginner's Guide
Author: Ivan Idris
Publisher: Packt Publishing Ltd
Total Pages: 348
Release: 2015-06-24
Genre: Computers
ISBN: 1785288830

In today's world of science and technology, it's all about speed and flexibility. When it comes to scientific computing, NumPy tops the list. NumPy will give you both speed and high productivity. This book will walk you through NumPy with clear, step-by-step examples and just the right amount of theory. The book focuses on the fundamentals of NumPy, including array objects, functions, and matrices, each of them explained with practical examples. You will then learn about different NumPy modules while performing mathematical operations such as calculating the Fourier transform, finding the inverse of a matrix, and determining eigenvalues, among many others. This book is a one-stop solution to knowing the ins and outs of the vast NumPy library, empowering you to use its wide range of mathematical features to build efficient, high-speed programs.