Multicomponent Strategies to Side Chain and Backbone Modified Cyclic Peptides

Multicomponent Strategies to Side Chain and Backbone Modified Cyclic Peptides
Author: Manuel García Ricardo
Publisher:
Total Pages: 0
Release: 2020*
Genre:
ISBN:

Labeling and macrocyclization are among the most challenging and important methods in the field of peptide chemistry. Multicomponent macrocyclizations are synthetic protocols that enable the simultaneous ring-closure and the introduction of additional functionality in one single step. The main goal of this research project was to develop new multicomponent reactions-based strategies towards labeling and macrocyclization of either the peptide backbone or the side chain.

Cyclic Peptides

Cyclic Peptides
Author: Jesko Koehnke
Publisher: Royal Society of Chemistry
Total Pages: 392
Release: 2017-12-15
Genre: Science
ISBN: 1782625283

This book provides the reader with a comprehensive view of the state-of-the-art of cyclic peptides, from construction to utility in biology and drug discovery.

Synthetic and Enzymatic Modifications of the Peptide Backbone

Synthetic and Enzymatic Modifications of the Peptide Backbone
Author:
Publisher: Academic Press
Total Pages: 640
Release: 2021-07-27
Genre: Science
ISBN: 0128212543

Methods in Enzymology series, highlights new advances in the field, with this new volume presenting interesting chapters. Each chapter is written by an international board of authors. Provides the authority and expertise of leading contributors from an international board of authors Presents the latest release in the Methods of Enzymology series Updated release includes the latest information on the Synthetic and Enzymatic Modifications of the Peptide Backbone

Fmoc Solid Phase Peptide Synthesis

Fmoc Solid Phase Peptide Synthesis
Author: W. Chan
Publisher: Oxford University Press
Total Pages: 371
Release: 1999-12-16
Genre: Science
ISBN: 019156589X

In the years since the publication of Atherton and Sheppard's volume, the technique of Fmoc solid-phase peptide synthesis has matured considerably and is now the standard approach for the routine production of peptides. The basic problems at the time of publication of this earlier work have now for the most part, been solved. As a result, innovators in the field have focussed their efforts to develop methodologies and chemistry for the synthesis of more complex structures. The focus of this new volume is much broader, and covers the essential procedures for the production of linear peptides and more advanced techniques for preparing cyclic, side-chain modified, phospho- and glycopeptides. Many other methods also deserving attention have been included: convergent peptide synthesis; peptide-protein conjugation; chemoselective ligation; and chemoselective purification. The difficult preparation of cysteine and methionine-containing peptides is also covered, as well as methods for overcoming aggregation during peptide chain assembly. Many of the techniques developed for the production of large arrays of peptides by parallel synthesis, such as t-bag, SPOT and PIN synthesis, have naturally been included. Finally, a survey of available automated instrumentation has also been provided.

Peptide Synthesis and Applications

Peptide Synthesis and Applications
Author: John Howl
Publisher: Springer Science & Business Media
Total Pages: 263
Release: 2008-02-02
Genre: Science
ISBN: 1592598773

Hands-on experts describe in step-by-step detail the key methodologies of contemporary peptide synthesis and illustrate their numerous applications. The techniques presented include protocols for chemical ligation, the synthesis of cyclic and phosphotyrosine-containing peptides, lipoamino acid- and sugar-conjugated peptides, and peptide purification and analyses. Additional chapters detail methodologies and instrumentation for high-throughput peptide synthesis, many different applications of peptides as novel research tools and biological probes, and the design and application of fluorescent substrate-based peptides that can be used to determine the selectivity and activity of peptidases. A practical guide to the identification of proteins using mass spectrometric analyses of peptide mixtures is also included.

Part I. Application of 2-Hydroxymethylacrylic Acid, a Product of Baylis-Hillman Reaction, for the Synthesis of Novel N-backbone-to-Side-Chain Cyclic Peptide Analogs: Strategies and Side Reactions Part II. Synthesis and Biological Activities of Chimeric Bioactive Peptides Featuring Amino Acids Coupled to 4-Anilino-N-Phenethyl-Piperidine

Part I. Application of 2-Hydroxymethylacrylic Acid, a Product of Baylis-Hillman Reaction, for the Synthesis of Novel N-backbone-to-Side-Chain Cyclic Peptide Analogs: Strategies and Side Reactions Part II. Synthesis and Biological Activities of Chimeric Bioactive Peptides Featuring Amino Acids Coupled to 4-Anilino-N-Phenethyl-Piperidine
Author: Ravil Rashitovich Petrov
Publisher:
Total Pages: 936
Release: 2007
Genre:
ISBN:

During my research career in Prof. V.J. Hruby's laboratory I worked on two different projects. The first project, which was initiated by the author, was planned to serve the need of our laboratory for a novel method of peptide cyclization. This method was planned to use recent advances in Pd0-catalyzed asymmetric synthesis combined with the structural richness offered by the Baylis-Hillman chemistry which could open new ways to diverse areas of drug design, molecular immunology and chemotherapy. This approach would provide cyclic peptides featuring N-alkylated amino acids that would confer high resistance to degradation by proteases. Because of numerous synthetic problems imposed, this strategy was not of considerable current use in peptide synthesis, especially on solid supports. However, despite a substantial amount of effort invested, this method faced serious drawbacks such as multistep synthesis and side reactions when applied to solid supports. Moreover, recent introduction of microwave technology which has helped to solve a great number of problems has led to a renaissance in the classical lactam and thioester bond cyclizations which overshadowed our quest for a novel methodology. The second project was focused on application of 4-anilidopiperidines for the synthesisof chimeric bioactive peptides. It was an effort towards the development of novel analgesics with reduced toxicity and enhanced potency. This project linked small molecule and multimeric ligand designs that were ongoing in our laboratory at the time. Major accomplishments in this project were made possible by successful resolution of several research challenges. I was able to find a straightforward, convenient and economical approach for the synthesis of novel analogues on a solid support. These developments led to novel compounds which showed substantial increases in their binding affinity relative to corresponding opioid analogues. To illustrate, compounds PET25, 26, 27, 29, 30, 31, and 32 showed high bioactivity and sub-nanomolar binding affinity to opioid receptors. Most of the peptides generated in the second project are still being investigated for their biological activities by our colleagues at the Department of Pharmacology, but the results to date indicate that some highly potent novel compounds have been made.

Cyclic Peptide Nanotubes

Cyclic Peptide Nanotubes
Author: Thomas Dudley Clark
Publisher:
Total Pages: 492
Release: 1998
Genre: Cyclic peptides
ISBN: 9780599009172

Recent reports have shown that cyclic peptides composed of an even number of alternating sc D- and sc L-amino acids can adopt flat, disc-like conformations and stack through backbone-backbone hydrogen-bonding to form extended nanotubular structures. The present work details a general strategy for limiting this self-assembly process through backbone alkylation, thereby preventing formation of insoluble hydrogen-bonded aggregates and giving rise to dimeric peptide nanocylinders. The resulting peptide dimers are shown to self-assemble both in solution and the solid state through the expected antiparallel beta-sheet hydrogen-bonding network. Scope and limitations are explored through spectroscopic and x-ray diffraction studies of twenty cyclic peptides varying in cyclic peptide ring size, location and identity of backbone alkyl substituents, and amino acid composition. Additionally, dimer-forming peptides bearing reactive side chain functinalities are shown to undergo selective covalent capture through either intermolecular ring-forming olefin metathesis or disulfide bond formation. Noncovalent assembly is used to favor covalent dimer formation at the expense of higher oligomers. Finally, related cyclic peptides composed of homochiral alpha-unsubstituted-beta-chiral-beta-amino acids (cyclic beta-peptides) bearing suitable hydrophobic side chains are shown to form transmembrane ion channels with potassium transport rates nearly twice that of gramicidin A.

Structure and Function in Peptide-based Supramolecular Designs

Structure and Function in Peptide-based Supramolecular Designs
Author: William Seth Horne
Publisher:
Total Pages: 456
Release: 2005
Genre: Cyclic peptides
ISBN:

Chemical synthesis of peptides grants the ability to expand beyond amino acid side chains found in nature as well as the connectivity of the peptide backbone. These synthetic modifications can control peptide structure and properties as well as create new methods for the preparation of biologically inspired structures. In the course of the research presented, the structural and functional consequences of synthetic peptide modifications are explored in several systems. In a project examining structural effects of chemical modifications to the peptide backbone, a variety of peptides incorporating 1,4-disubstituted-1,2,3-triazole [epsilon]-amino acids are described. Effects of triazole backbone modifications in designed cyclic structures as well as protein-like linear architectures are examined. In an effort to expand on the known capacity of cyclic D,L-[alpha]-peptides to disrupt biological membranes, sequences capable of inhibiting virus infection of mammalian cells are examined. A compound that inhibits adenovirus infection of host cells at [micro]M doses through disruption of an endosomal pH gradient key in the infection cycle of a number of viral pathogens is described. In a project aimed toward fabrication of conductive materials from self-assembling peptides, cyclic D,L-[alpha]-bearing side chains introduced to modify electronic properties in an assembled nanotubular architecture are discussed. It is demonstrated that the hydrogen bond directed self-assembly of the cyclic D,L-[alpha]-peptide backbone can promote charge transfer between aromatic side chains and that peptide self-association can be controlled through electrochemical charge state of redox-active side chains. In total, the work summarized in this thesis builds on the idea of peptides and proteins as scaffolds for the design of supramolecular assemblies with interesting structural and functional properties.

Inhibitors of Protein–Protein Interactions

Inhibitors of Protein–Protein Interactions
Author: Ali Tavassoli
Publisher: Royal Society of Chemistry
Total Pages: 357
Release: 2020-12-07
Genre: Science
ISBN: 178801569X

Protein-protein interactions (PPI) are at the heart of the majority of cellular processes, and are frequently dysregulated or usurped in disease. Given this central role, the inhibition of PPIs has been of significant interest as a means of treating a wide variety of diseases. However, there are inherent challenges in developing molecules capable of disrupting the relatively featureless and large interfacial areas involved. Despite this, there have been a number of successes in this field in recent years using both traditional drug discovery approaches and innovative, interdisciplinary strategies using novel chemical scaffolds. This book comprehensively covers the various aspects of PPI inhibition, encompassing small molecules, peptidomimetics, cyclic peptides, stapled peptides and macrocycles. Illustrated throughout with successful case studies, this book provides a holistic, cutting-edge view of the subject area and is ideal for chemical biologists and medicinal chemists interested in developing PPI inhibitors.

Peptide Macrocycles

Peptide Macrocycles
Author: Matthew B. Coppock
Publisher: Humana
Total Pages: 469
Release: 2021-11-02
Genre: Technology & Engineering
ISBN: 9781071616888

This volume explores the latest techniques and strategies used to study the field of peptide macrocycles. The chapters in this book ae organized into four parts: macrocycles synthesis, combinational library synthesis and screening, macrocycle characterization, and unique applications. Part One looks at a variety of peptide cyclization methodologies, and Part Two describes methods for the creation of peptide macrocycles libraries and their subsequent screening against biological targets of interest. Part Three discusses the study and characterization of peptide macrocycle-target interactions, and Part Four introduces unique applications for peptide macrocycles, from higher-order structure formation to post-synthetic functional modifications. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls. Cutting-edge and comprehensive, Peptide Macrocycles: Methods and Protocols is a valuable resource for both novice and expert researchers looking to learn more about this developing field.