Nitrogen Cycling and Microbial Communities of Alpine Soils in the Pacific Northwest

Nitrogen Cycling and Microbial Communities of Alpine Soils in the Pacific Northwest
Author: Anna Simpson
Publisher:
Total Pages: 160
Release: 2018
Genre:
ISBN:

The alpine Pacific Northwest is an environment of stunning beauty and environmental extremes, with acidic, low-nutrient soils, snow cover often exceeding 4-5 m, and snow periods occasionally exceeding 9 months out of the year. Nitrogen (N) deposition from increasing urbanization and intensive agriculture can cause changes in alpine soil chemistry and plant species abundance and increase leaching of inorganic N into streams and lakes. In the state of Washington has already exceeded critical N loads for shifts in alpine lichen communities (Geiser et al., 2010) and alpine lake microbiota (Sheibley et al., 2014). The effects of climate change, which could include earlier snowmelt, increased fall rains, and even the complete disappearance of permanent snowfields and glaciers, threaten to exacerbate effects of N deposition even further by causing changes in plant phenology and increasing decomposition of soil organic matter. In this study I used fertilizer treatment of 0, 3, 5 and 10 kg NH4NO3-N ha−1 yr−1 to simulate increased N deposition at three alpine meadows of the Pacific Northwest at Mount Rainier, North Cascades and Olympic National Parks. Using the indicator of increased soil NO3-N availability to alpine plants and microbes, I define the empirical critical load upper limit for Pacific Northwest alpine meadows to be 6 kg N ha−1 yr−1. I found that increased fall microbial N uptake in these meadows appears to serve as a buffer for inorganic N loss with fall rains. No increases in plant species were observed during the course of the study. In soils with available soil inorganic N from slow depolymerization and mineralization, N pollution accumulated in plots with higher N and greater abundance of forbs and graminoid species. In very N-limited soils, N deposition was evenly dispersed among plant communities. I also sampled the soil microbial communities of barren, permanent snowfield soils at Mount Rainier and North Cascades National Parks. I used 16SrRNA metagenomic amplicon sequencing to examine the differences between the microbial communities in samples taken in dry soil that had only been covered by seasonal snow, and soil underneath permanent snowpack. Photoautotrophic bacteria were not present in samples taken under snowpack and comprised less than 1% of reads in samples taken from exposed soils. Soils were dominated by Deltaproteobacteria from the genus Anaeromyxobacter, which were particularly abundant under snowpack, and a number of bacteria from the phylum Gemmatimonadetes. Overall, permanent snowfield soils of the Pacific Northwest contain diverse heterotrophic and chemoautolithotrophic communities of bacteria but have very low overall biomass, comparable to barren soils sampled in the Himalayas. Soil bacterial communities probably depend at least partially on organic matter from atmospheric deposition and carbon fixation from seasonal snow algae for survival in this harsh environment.

Microbial Life in the Cryosphere and Its Feedback on Global Change

Microbial Life in the Cryosphere and Its Feedback on Global Change
Author: Susanne Liebner
Publisher: Walter de Gruyter GmbH & Co KG
Total Pages: 323
Release: 2021-01-18
Genre: Science
ISBN: 311049390X

The cryosphere stands for environments where water appears in a frozen form. It includes permafrost, glaciers, ice sheets, and sea ice and is currently more affected by Global Change than most other regions of the Earth. In the cryosphere, limited water availability and subzero temperatures cause extreme conditions for all kind of life which microorganisms can cope with extremely well. The cryosphere’s microbiota displays an unexpectedly large genetic potential, and taxonomic as well as functional diversity which, however, we still only begin to map. Also, microbial communities influence reaction patterns of the cryosphere towards Global Change. Altered patterns of seasonal temperature fluctuations and precipitation are expected in the Arctic and will affect the microbial turnover of soil organic matter (SOM). Activation of nutrients by thawing and increased active layer thickness as well as erosion renders nutrient stocks accessible to microbial activities. Also, glacier melt and retreat stimulate microbial life in turn influencing albedo and surface temperatures. In this context, the functional resilience of microbial communities in the cryosphere is of major interest. Particularly important is the ability of microorganisms and microbial communities to respond to changes in their surroundings by intracellular regulation and population shifts within functional niches, respectively. Research on microbial life exposed to permanent freeze or seasonal freeze-thaw cycles has led to astonishing findings about microbial versatility, adaptation, and diversity. Microorganisms thrive in cold habitats and new sequencing techniques have produced large amounts of genomic, metagenomic, and metatranscriptomic data that allow insights into the fascinating microbial ecology and physiology at low and subzero temperatures. Moreover, some of the frozen ecosystems such as permafrost constitute major global carbon and nitrogen storages, but can also act as sources of the greenhouse gases methane and nitrous oxide. In this book we summarize state of the art knowledge on whether environmental changes are met by a flexible microbial community retaining its function, or if the altered conditions also render the community in a state of altered properties that affect the Earth’s element cycles and climate. This book brings together research on the cryosphere’s microbiota including permafrost, glaciers, and sea ice in Arctic and Antarctic regions. Different spatial scales and levels of complexity are considered, spanning from ecosystem level to pure culture studies of model microbes in the laboratory. It aims to attract a wide range of parties with interest in the effect of climate change and/or low temperatures on microbial nutrient cycling and physiology.

Polar Microbiology

Polar Microbiology
Author: Asim K. Bej
Publisher: CRC Press
Total Pages: 424
Release: 2009-12-23
Genre: Science
ISBN: 1420083880

Pollution has accompanied polar exploration since Captain John Davis' arrival on the Antarctic continent in 1821 and has become an unavoidable consequence of oil spills in our polar regions. Fortunately, many of the organisms indigenous to Polar ecosystems have the ability to degrade pollutants. It is this metabolic capacity that forms the basis fo

Antarctic Terrestrial Microbiology

Antarctic Terrestrial Microbiology
Author: Don A. Cowan
Publisher: Springer
Total Pages: 324
Release: 2014-07-08
Genre: Science
ISBN: 3642452132

This book brings together many of the world’s leading experts in the fields of Antarctic terrestrial soil ecology, providing a comprehensive and completely up-to-date analysis of the status of Antarctic soil microbiology. Antarctic terrestrial soils represent one of the most extreme environments on Earth. Once thought to be largely sterile, it is now known that these diverse and often specialized extreme habitats harbor a very wide range of different microorganisms. Antarctic soil communities are relatively simple, but not unsophisticated. Recent phylogenetic and microscopic studies have demonstrated that these communities have well established trophic structuring and play a significant role in nutrient cycling in these cold and often dry desert ecosystems. They are surprisingly responsive to change and potentially sensitive to climatic perturbation. Antarctic terrestrial soils also harbor specialized ‘refuge’habitats, where microbial communities develop under (and within) translucent rocks. These cryptic habitats offer unique models for understanding the physical and biological ‘drivers’ of community development, function and evolution.

Psychrophiles: From Biodiversity to Biotechnology

Psychrophiles: From Biodiversity to Biotechnology
Author: Rosa Margesin
Publisher: Springer
Total Pages: 685
Release: 2017-06-22
Genre: Science
ISBN: 3319570579

Cold adaptation includes a complex range of structural and functional adaptations at the level of all cellular constituents, and these adaptations render cold-adapted organisms particularly useful for biotechnological applications. This book presents the most recent knowledge of (i) boundary conditions for microbial life in the cold, (ii) microbial diversity in various cold ecosystems, (iii) molecular cold adaptation mechanisms and (iv) the resulting biotechnological perspectives.

Microbiology of Extreme Soils

Microbiology of Extreme Soils
Author: Patrice Dion
Publisher: Springer Science & Business Media
Total Pages: 374
Release: 2007-12-22
Genre: Science
ISBN: 354074231X

This volume provides a comprehensive coverage of the principal extreme soil ecosystems of natural and anthropogenic origin. Extreme soils oppose chemical or physical limits to colonization by most soil organisms and present the microbiologist with exciting opportunities. Described here are a range of fascinating environments from permafrost to Martian soils. The book includes chapters on basic research in addition to applications in biotechnology and bioremediation.