Mechanistic Studies of Disulfide Bond Formation in the Endoplasmic Reticulum

Mechanistic Studies of Disulfide Bond Formation in the Endoplasmic Reticulum
Author: Mohini Sridharan Kulp
Publisher:
Total Pages: 206
Release: 2005
Genre:
ISBN:

This research focuses on a key question in eukaryotic oxidative protein folding: how does the ER balance the opposing redox reactions of disulfide oxidation and reduction/isomerization that are required for native disulfide bond formation. This question has been extensively investigated in the prokaryotic periplasm and has led to the characterization of two discrete pathways: one (DsbA/B) responsible for catalyzing disulfide formation and second (DsbC/D) responsible for promoting rearrangement of incorrect disulfides. Our study now reveals an entirely different mechanism for disulfide folding in the ER where these two redox functions are encompassed within a single Ero1p-PDI pathway.

Folding of Disulfide Proteins

Folding of Disulfide Proteins
Author: Rowen J. Y. Chang
Publisher: Springer Science & Business Media
Total Pages: 290
Release: 2011-08-12
Genre: Science
ISBN: 1441972730

This book aims to cover the knowledge of protein folding accumulated from studies of disulfide-containing proteins, including methodologies, folding pathways, and folding mechanism of numerous extensively characterized disulfide proteins. Folding of Disulfide Proteins will be valuable supplementary reading for general biochemistry, biophysics, molecular biology, and cellular biology courses for graduate and undergraduate students. This book can also be used for specialized graduate-level biochemistry, biophysics, and molecular biology courses dedicated to protein folding as well as related biological problems and diseases. Will also be of interest to everybody interested in problems related to protein folding, and anyone who is interested in understanding the mechanism of protein misfolding and protein misfolding-related diseases.

Structural Studies of Protein Disulfide Isomerases

Structural Studies of Protein Disulfide Isomerases
Author: Sara Bastos
Publisher:
Total Pages:
Release: 2013
Genre:
ISBN:

"AbstractProtein disulfide isomerases (PDIs) family members are essential for proper folding of proteins entering the secretory pathway. Studies of these remarkable enzymes have shown that PDIs catalyze the oxidation, reduction and isomeration of disulfide bonds in the endoplasmic reticulum (ER). PDIs are found and conserved in a wide range of species and are ubiquitously expressed.In all eukaryotes, the ER redox potential must be tightly controlled since a large fraction of proteins within the cell require disulfide-bond formation. How PDIA1 maintains a balance between oxidation and reduction remains an important open question. Previous studies have revealed the tendency of PDIA1 to dimerize, but little is known about the functional relevance of PDIA1 dimerization. Also a recent crystal structure of a dimeric form of human PDIA1 shows that the formation of dimers inhibits substrate binding and therefore may function as a mechanism to regulate PDIA1 activity in the ER. This thesis has found that PDIA1 dimerizes in vivo and proposes that the dimerization of PDIA1 has physiological relevance by auto-regulating its activity. This mechanism would allow the ER to maintain a balance between oxidation and reduction necessary for native disulfide formation. Another enzyme, PDILT, is a testis-specific PDI. PDILT shares a high sequence similarity (32% identity) with PDIA1. Previous studies suggest that they share the same mechanism for binding substrates, which is mediated by a highly conserved hydrophobic pocket. In this thesis, the crystal structure of the PDILT b'-domain is reported and reveals a hydrophobic pocket that contains interesting features for substrate binding. Structural studies of this new PDI-member will help to understand the important role that PDILT plays in the differentiation and maturation on spermatozoids. The study of ER protein folding in the testis may lead to the identification of proteins and pathways associated with male infertility. " --

Oxidative Folding of Proteins

Oxidative Folding of Proteins
Author: Matthias J Feige
Publisher: Royal Society of Chemistry
Total Pages: 450
Release: 2018-07-30
Genre: Science
ISBN: 1782629904

The formation of disulphide bonds is probably the most influential modification of proteins. These bonds are unique among post-translational modifications of proteins as they can covalently link cysteine residues far apart in the primary sequence of a protein. This has the potential to convey stability to otherwise marginally stable structures of proteins. However, the reactivity of cysteines comes at a price: the potential to form incorrect disulphide bonds, interfere with folding, or even cause aggregation. An elaborate set of cellular machinery exists to catalyze and guide this process: facilitating bond formation, inhibiting unwanted pairings and scrutinizing the outcomes. Only in recent years has it become clear how intimately connected this cellular machinery is with protein folding helpers, organellar redox balance and cellular homeostasis as a whole. This book comprehensively covers the basic principles of disulphide bond formation in proteins and describes the enzymes involved in the correct oxidative folding of cysteine-containing proteins. The biotechnological and pharmaceutical relevance of proteins, their variants and synthetic replicates is continuously increasing. Consequently this book is an invaluable resource for protein chemists involved in realted research and production.

Peptides

Peptides
Author: Bernd Gutte
Publisher: Elsevier
Total Pages: 527
Release: 1995-10-24
Genre: Science
ISBN: 0080538592

In recent years, research has shown the importance of peptides in neuroscience, immunology, and cell biology. Active research programs worldwide are now engaged in developing peptide-based drugs and vaccines using modification of natural peptides and proteins, design of artificial peptides and peptide mimetics, and screening of peptide and phage libraries. In this comprehensive book, the authors discuss peptide synthesis and application within the context of their increasing importance to the pharmaceutical industry. Peptides: Synthesis, Structures, and Applications explores the broad growth of information in modern peptide synthetic methods and the structure-activity relationships of synthetic polypeptides. - The history of peptide chemistry - Amide formation, deprotection, and disulfide formation in peptide synthesis - Solid-phase peptide synthesis - a-helix formation by peptides in water - Stability and dynamics of peptide conformation - An overview of structure-function studies of peptide hormones - Neuropeptides:peptide and nonpeptide analogs - Reversible inhibitors of serine proteinases - Design of polypeptides - Current capabilities and future possibilities of soluble chemical combinatorial libraries - Epitope mapping with peptides - Synthesis and applications of branched peptides in immunological methods and vaccines

Oxidative Folding of Peptides and Proteins

Oxidative Folding of Peptides and Proteins
Author: Luis Moroder
Publisher: Royal Society of Chemistry
Total Pages: 453
Release: 2009
Genre: Science
ISBN: 0854041486

With contributions from experts in the field, this book provides a comprehensive overview of the oxidative folding of cysteine-rich peptides.

Handbook of Biologically Active Peptides

Handbook of Biologically Active Peptides
Author: Abba Kastin
Publisher: Elsevier
Total Pages: 1682
Release: 2011-04-28
Genre: Science
ISBN: 0080463797

Peptides play a crucial role in many physiological processes including actions as neurotransmitters, hormones, and antibiotics. Research has shown their importance in such fields as neuroscience, immunology, pharmacology, and cell biology. The Handbook of Biologically Active Peptides presents, for the first time, this tremendous body of knowledge in the field of biologically active peptides in one single reference. The section editors and contributors represent some of the most sophisticated and distinguished scientists working in basic sciences and clinical medicine. The Handbook of Biologically Active Peptides is a definitive, all-encompassing reference that will be indispensable for individuals ranging from peptide researchers, to biochemists, cell and molecular biologists, neuroscientists, pharmacologists, and to endocrinologists. Chapters are designed to be a source for workers in the field and will enable researchers working in a specific area to examine other related areas with which they would not ordinarily be familiar.*Chapters are designed to be a source for workers in the field and will enable researchers working in a specific area to examine other related areas that they would not ordinarily be familiar.*Fascinating relationships described in the book include the presence of some peptides originally found in frog skin that persist in the human human and brain where they can affect food intake and obesity.

Encyclopedia of Signaling Molecules

Encyclopedia of Signaling Molecules
Author: Sangdun Choi
Publisher: Springer
Total Pages: 0
Release: 2012-07-09
Genre: Medical
ISBN: 9781441904607

Biological processes are driven by complex systems of functionally interacting signaling molecules. Thus, understanding signaling molecules is essential to explain normal or pathological biological phenomena. A large body of clinical and experimental data has been accumulated over these years, albeit in fragmented state. Hence, systems biological approaches concomitant with the understanding of each molecule are ideal to delineate signaling networks/pathways involved in the biologically important processes. The control of these signaling pathways will enrich our healthier life. Currently, there are more than 30,000 genes in human genome. However, not all the proteins encoded by these genes work equally in order to maintain homeostasis. Understanding the important signaling molecules as completely as possible will significantly improve our research-based teaching and scientific capabilities. This encyclopedia presents 350 biologically important signaling molecules and the content is built on the core concepts of their functions along with early findings written by some of the world’s foremost experts. The molecules are described by recognized leaders in each molecule. The interactions of these single molecules in signal transduction networks will also be explored. This encyclopedia marks a new era in overview of current cellular signaling molecules for the specialist and the interested non-specialist alike During past years, there were multiple databases to gather this information briefly and very partially. Amidst the excitement of these findings, one of the great scientific tasks of the coming century is to bring all the useful information into a place. Such an approach is arduous but at the end will infuse the lacunas and considerably be a streamline in the understanding of vibrant signaling networks. Based on this easy-approach, we can build up more complicated biological systems.