Halophiles: Genetics and Genomes

Halophiles: Genetics and Genomes
Author: R. Thane Papke
Publisher: Caister Academic Press
Total Pages: 218
Release: 2019-04-23
Genre: Medical
ISBN: 9781912530182

Extreme halophilic environments, including salt lakes and springs, seawater evaporation facilities for the production of sea salt, and subterranean salt deposits derived from ancient oceans are distributed patchily all over the earth. The life that dominates them is microbial e.g., prokaryotes and the viruses that infect them. The best studied in these environments are the haloarchaea (family Halobacteriaceae), a diverse group of salt-loving organisms in the archaeal phylum Euryarchaeota. These remarkable organisms have an obligate requirement for salt concentrations between 10% and 35% NaCl for survival (sea water has 3.5% salt). Haloarchaea have evolved several biochemical and molecular strategies to counteract the deleterious effects of their salty environments including efficient ion pumps, UV absorbing pigments, proteins that can resistant the effects of osmotic stress and the denaturing effects of salts. The best studied extremely halophilic member of the Bacteria is Salinibacter, which is abundant in saltern crystallizer ponds worldwide. The application of modern genomic approaches to research on halophilic Archaea and Bacteria and their viruses in recent years has yielded fascinating insights into the adaptations and evolution of these unique organisms.This book highlights current genetics and genomics research to provide a timely overview. Chapters are written by expert authors from around the world and include topics such as: ecology and evolution of Haloquadratum walsbyi; microdiversity of Salinibacter ruber; horizontal gene transfer in halobacteria; comparative genomics of haloarchaeal viruses; genomics of the halophilic bacteria Natranaerobius thermophilus and Halobacillus halophilus; the haloarchaeal cell wall; cell cycle and polyploidy in haloarchaea; cell regulation by proteolytic systems and protein conjugation.This major new work represents a valuable source of information to all those scientists interested in halophilic microorganisms, extremophiles, microbial ecology and environmental microbiology.

Physiology, Genomics, and Biotechnological Applications of Extremophiles

Physiology, Genomics, and Biotechnological Applications of Extremophiles
Author: Gunjal, Aparna B.
Publisher: IGI Global
Total Pages: 473
Release: 2021-12-10
Genre: Science
ISBN: 1799891461

Extremophiles are organisms that are able to live in extreme conditions due to their unique physiological and genetic adaptations. Extremophiles are harnessed for their extremozymes that have wide applications in biotechnology, pharmaceutics, and industry. Recent developments in genomics and proteomics have helped unravel the mechanism of survival, physiological adaptation, and genomics structure of extremophiles. Physiology, Genomics, and Biotechnological Applications of Extremophiles covers innovative developments in understanding the physiology and biochemistry of extremophiles using the -omics perspective, focuses on the advancement in mechanisms of the extremophiles that makes them able to survive under extreme conditions, and discusses the applications of extremophiles in astrobiology. Covering topics such as genomics and the history and identification of extremophiles, it is ideal for students, professors, researchers, academicians, microbiologists, agricultural scientists, and biotechnologists.

Halophilic Microorganisms

Halophilic Microorganisms
Author: Antonio Ventosa
Publisher: Springer Science & Business Media
Total Pages: 363
Release: 2013-11-21
Genre: Science
ISBN: 366207656X

Various groups of microorganisms - bacteria, archaea, algae and even fungi - have adapted to a life in a hypersaline environment. Halophilic Microorganisms explores the many-fold aspects of life under these extreme conditions. Several contributions analyze the microbial communities in different hypersaline environments such as salterns, soda lakes, and the Dead Sea or salt sediments. Reviews of their biodiversity, phylogeny, and genetics are given as well as of the diverse adaptation strategies of salt-tolerant or salt-requiring microorganisms. Microorganisms that have adapted to moderate salt concentrations or to habitats with drastic fluctuations are also treated in addition to the extreme halophiles. Their physiological, biochemical and molecular mechanisms developed in response to salinity and high osmotic pressure as well as current and future biotechnological applications are presented.

Adaptation to Life at High Salt Concentrations in Archaea, Bacteria, and Eukarya

Adaptation to Life at High Salt Concentrations in Archaea, Bacteria, and Eukarya
Author: Nina Gunde-Cimerman
Publisher: Springer Science & Business Media
Total Pages: 600
Release: 2005-09-30
Genre: Science
ISBN: 9781402036323

Salt is an essential requirement of life. Already from ancient times (e. g. , see the books of the Bible) its importance in human life has been known. For example, salt symbolizes destruction (as in Sodom and Gomorra), but on the other hand it has been an ingredient of every sacrifice during the Holy Temple periods. Microbial life in concentrated salt solutions has fascinated scientists since its discovery. Recently there have been several international meetings and books devoted entirely to halophiles. This book includes the proceedings of the “Halophiles 2004” conference held in Ljubljana, Slovenia, in September 2004 (www. u- lj. si/~bfbhaloph/index. html). This meeting was attended by 120 participants from 25 countries. The editors have selected presentations given at the meeting for this volume, and have also invited a number of contributions from experts who had not been present in Ljubljana. This book complements “Halophilic Microorganisms”, edited by A. Ventosa and published by Springer-Verlag (2004), “Halophilic Microorganism and their Environments” by A. Oren (2002), published by Kluwer Academic Publishers as volume 5 of “Cellular Origins, Life in Extreme Habitats and Astrobiology” (COLE), and “Microbiology and Biogeochemistry of Hypersaline Environments” edited by A. Oren, and published by CRC Press, Boca Raton (1999). Salt-loving (halophilic) microorganisms grow in salt solutions above seawater salinity (~3. 5% salt) up to saturation ranges (i. e. , around 35% salt). High concentrations of salt occur in natural environments (e. g.

The Pangenome

The Pangenome
Author: Hervé Tettelin
Publisher: Springer Nature
Total Pages: 311
Release: 2020-04-30
Genre: Science
ISBN: 3030382818

This open access book offers the first comprehensive account of the pan-genome concept and its manifold implications. The realization that the genetic repertoire of a biological species always encompasses more than the genome of each individual is one of the earliest examples of big data in biology that opened biology to the unbounded. The study of genetic variation observed within a species challenges existing views and has profound consequences for our understanding of the fundamental mechanisms underpinning bacterial biology and evolution. The underlying rationale extends well beyond the initial prokaryotic focus to all kingdoms of life and evolves into similar concepts for metagenomes, phenomes and epigenomes. The book’s respective chapters address a range of topics, from the serendipitous emergence of the pan-genome concept and its impacts on the fields of microbiology, vaccinology and antimicrobial resistance, to the study of microbial communities, bioinformatic applications and mathematical models that tie in with complex systems and economic theory. Given its scope, the book will appeal to a broad readership interested in population dynamics, evolutionary biology and genomics.

Advances in Understanding the Biology of Halophilic Microorganisms

Advances in Understanding the Biology of Halophilic Microorganisms
Author: Russell H. Vreeland
Publisher: Springer Science & Business Media
Total Pages: 247
Release: 2012-12-14
Genre: Medical
ISBN: 9400755392

This book is designed to be a long term career reference. The chapters present modern procedures. This is a how-to-book with a difference. These chapters: - reveal the background information about working with salt loving organisms, - are loaded with information about how experiments are conducted under high salt, - provide information about analyses that work under these conditions and those that may not, - present a wide range of details from laboratory designs to equipment used and even to simple anecdotal hints that can only come from experience. Microbiological training focuses largely on the growth, the handling and the study of the microbes associated with humans and animals. Yet the largest proportion of the Earth’s microbiota lives in saline environments such as the Oceans, saline deserts and terminal hypersaline environments. This need for salt can be intimidating for those interested in entering the field or for those interested in understanding how such research is accomplished.

Host - Pathogen Interaction

Host - Pathogen Interaction
Author: Gottfried Unden
Publisher: John Wiley & Sons
Total Pages: 236
Release: 2016-09-06
Genre: Science
ISBN: 3527337458

Dieser Werk behandelt umfassend und aktuell Stoffwechselveränderungen beim Menschen, die mit Wirt-Erreger-Beziehungen in Zusammenhang stehen. Teil 1 beschreibt die Anpassung pathogener Mikroben an Stoffwechselvorgänge. Teil 2 zeigt Wege für die Entwicklung neuartiger Antibiotika.

The Prokaryotes

The Prokaryotes
Author: Edward F. DeLong
Publisher: Springer
Total Pages: 662
Release: 2013-03-22
Genre: Science
ISBN: 9783642301421

The Prokaryotes is a comprehensive, multi-authored, peer reviewed reference work on Bacteria and Achaea. This fourth edition of The Prokaryotes is organized to cover all taxonomic diversity, using the family level to delineate chapters. Different from other resources, this new Springer product includes not only taxonomy, but also prokaryotic biology and technology of taxa in a broad context. Technological aspects highlight the usefulness of prokaryotes in processes and products, including biocontrol agents and as genetics tools. The content of the expanded fourth edition is divided into two parts: Part 1 contains review chapters dealing with the most important general concepts in molecular, applied and general prokaryote biology; Part 2 describes the known properties of specific taxonomic groups. Two completely new sections have been added to Part 1: bacterial communities and human bacteriology. The bacterial communities section reflects the growing realization that studies on pure cultures of bacteria have led to an incomplete picture of the microbial world for two fundamental reasons: the vast majority of bacteria in soil, water and associated with biological tissues are currently not culturable, and that an understanding of microbial ecology requires knowledge on how different bacterial species interact with each other in their natural environment. The new section on human microbiology deals with bacteria associated with healthy humans and bacterial pathogenesis. Each of the major human diseases caused by bacteria is reviewed, from identifying the pathogens by classical clinical and non-culturing techniques to the biochemical mechanisms of the disease process. The 4th edition of The Prokaryotes is the most complete resource on the biology of prokaryotes. The following volumes are published consecutively within the 4th Edition: Prokaryotic Biology and Symbiotic Associations Prokaryotic Communities and Ecophysiology Prokaryotic Physiology and Biochemistry Applied Bacteriology and Biotechnology Human Microbiology Actinobacteria Firmicutes Alphaproteobacteria and Betaproteobacteria Gammaproteobacteria Deltaproteobacteria and Epsilonproteobacteria Other Major Lineages of Bacteria and the Archaea

The Biochemistry of Archaea (Archaebacteria)

The Biochemistry of Archaea (Archaebacteria)
Author: M. Kates
Publisher: Elsevier
Total Pages: 633
Release: 1993-12-13
Genre: Science
ISBN: 0080860869

In the last 10 years, considerable information has accumulated on the biochemistry of archaea. In this volume, the subject as a whole is treated in a comprehensive manner. The book brings together recent knowledge concerning general metabolism, bioenergetics, molecular biology and genetics, membrane lipid and cell-wall structural chemistry and evolutionary relations, of the three major groups of archaea: the extreme halophiles, the extreme thermophiles, and the methanogens.Subjects included are: the evolutionary relationship of these microorganisms to all other living cells; special metabolic features of archeaea; protein structural chemistry; cell envelopes; molecular biology in archaea including DNA structure and replication, transcription apparatus, translation apparatus, and ribosomal structure; and a final chapter on the molecular genetics of archaea. This comprehensive scope ensures its usefulness to researchers, and stimulates further study in this rapidly developing field.