Genes & Signals

Genes & Signals
Author: Mark Ptashne
Publisher: CSHL Press
Total Pages: 212
Release: 2002
Genre: Medical
ISBN: 9780879696337

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Genomic Signal Processing

Genomic Signal Processing
Author: Ilya Shmulevich
Publisher: Princeton University Press
Total Pages: 314
Release: 2014-09-08
Genre: Science
ISBN: 1400865263

Genomic signal processing (GSP) can be defined as the analysis, processing, and use of genomic signals to gain biological knowledge, and the translation of that knowledge into systems-based applications that can be used to diagnose and treat genetic diseases. Situated at the crossroads of engineering, biology, mathematics, statistics, and computer science, GSP requires the development of both nonlinear dynamical models that adequately represent genomic regulation, and diagnostic and therapeutic tools based on these models. This book facilitates these developments by providing rigorous mathematical definitions and propositions for the main elements of GSP and by paying attention to the validity of models relative to the data. Ilya Shmulevich and Edward Dougherty cover real-world situations and explain their mathematical modeling in relation to systems biology and systems medicine. Genomic Signal Processing makes a major contribution to computational biology, systems biology, and translational genomics by providing a self-contained explanation of the fundamental mathematical issues facing researchers in four areas: classification, clustering, network modeling, and network intervention.

Introduction to Genomic Signal Processing with Control

Introduction to Genomic Signal Processing with Control
Author: Aniruddha Datta
Publisher: CRC Press
Total Pages: 288
Release: 2018-10-08
Genre: Technology & Engineering
ISBN: 1420006673

Studying large sets of genes and their collective function requires tools that can easily handle huge amounts of information. Recent research indicates that engineering approaches for prediction, signal processing, and control are well suited for studying multivariate interactions. A tutorial guide to the current engineering research in genomics, Introduction to Genomic Signal Processing with Control provides a state-of-the-art account of the use of control theory to obtain intervention strategies for gene regulatory networks. The book builds up the necessary molecular biology background with a basic review of organic chemistry and an introduction of DNA, RNA, and proteins, followed by a description of the processes of transcription and translation and the genetic code that is used to carry out the latter. It discusses control of gene expression, introduces genetic engineering tools such as microarrays and PCR, and covers cell cycle control and tissue renewal in multi-cellular organisms. The authors then delineate how the engineering approaches of classification and clustering are appropriate for carrying out gene-based disease classification. This leads naturally to expression prediction, which in turn leads to genetic regulatory networks. The book concludes with a discussion of control approaches that can be used to alter the behavior of such networks in the hope that this alteration will move the network from a diseased state to a disease-free state. Written by recognized leaders in this emerging field, the book provides the exact amount of molecular biology required to understand the engineering applications. It is a self-contained resource that spans the diverse disciplines of molecular biology and electrical engineering.

Genes in Conflict

Genes in Conflict
Author: Austin BURT
Publisher: Harvard University Press
Total Pages: 613
Release: 2009-06-30
Genre: Science
ISBN: 0674029119

Covering all species from yeast to humans, this is the first book to tell the story of selfish genetic elements that act narrowly to advance their own replication at the expense of the larger organism.

Epigenetic Mechanisms of Gene Regulation

Epigenetic Mechanisms of Gene Regulation
Author: Vincenzo E. A. Russo
Publisher:
Total Pages: 716
Release: 1996
Genre: Medical
ISBN:

Many inheritable changes in gene function are not explained by changes in the DNA sequence. Such epigenetic mechanisms are known to influence gene function in most complex organisms and include effects such as transposon function, chromosome imprinting, yeast mating type switching and telomeric silencing. In recent years, epigenetic effects have become a major focus of research activity. This monograph, edited by three well-known biologists from different specialties, is the first to review and synthesize what is known about these effects across all species, particularly from a molecular perspective, and will be of interest to everyone in the fields of molecular biology and genetics.

Genetic Algorithms for Control and Signal Processing

Genetic Algorithms for Control and Signal Processing
Author: Kim F. Man
Publisher: Springer Science & Business Media
Total Pages: 226
Release: 2012-12-06
Genre: Technology & Engineering
ISBN: 1447109554

The series Advances in Industrial Control aims to report and encourage technology transfer in control engineering. The rapid development of control technology impacts all areas of the control discipline. New theory, new controllers, actuators, sensors, new industrial processes, computer methods, new applications, new philosophies, . . . , new challenges. Much of this development work resides in industrial reports, feasibility study papers and the reports of advanced collaborative projects. The series offers an opportunity for researchers to present an extended exposition of such new work in all aspects of industrial control for wider and rapid dissemination. The emerging technologies in control include fuzzy logic, intelligent control, neural networks and hardware developments like micro-electro-mechanical systems and autonomous vehicles. This volume describes the biological background, basic construction and application of the emerging technology of Genetic Algorithms. Dr Kim Man and his colleagues have written a book which is both a primer introducing the basic concepts and a research text which describes some of the more advanced applications of the genetic algorithmic method. The applications described are especially useful since they indicate the power of the GA method in solving a wide range of problems. These sections are also instructive in showing how the mechanics of the GA solutions are obtained thereby acting as a template for similar types of problems. The volume is a very welcome contribution to the Advances in Industrial Control Series. M. J. Grimble and M. A.

Genomic Signal Processing and Statistics

Genomic Signal Processing and Statistics
Author: Edward R. Dougherty
Publisher: Hindawi Publishing Corporation
Total Pages: 456
Release: 2005
Genre: DNA microarrays
ISBN: 9775945070

Recent advances in genomic studies have stimulated synergetic research and development in many cross-disciplinary areas. Processing the vast genomic data, especially the recent large-scale microarray gene expression data, to reveal the complex biological functionality, represents enormous challenges to signal processing and statistics. This perspective naturally leads to a new field, genomic signal processing (GSP), which studies the processing of genomic signals by integrating the theory of signal processing and statistics. Written by an international, interdisciplinary team of authors, this invaluable edited volume is accessible to students just entering this emergent field, and to researchers, both in academia and in industry, in the fields of molecular biology, engineering, statistics, and signal processing. The book provides tutorial-level overviews and addresses the specific needs of genomic signal processing students and researchers as a reference book. The book aims to address current genomic challenges by exploiting potential synergies between genomics, signal processing, and statistics, with special emphasis on signal processing and statistical tools for structural and functional understanding of genomic data. The first part of this book provides a brief history of genomic research and a background introduction from both biological and signal-processing/statistical perspectives, so that readers can easily follow the material presented in the rest of the book. In what follows, overviews of state-of-the-art techniques are provided. We start with a chapter on sequence analysis, and follow with chapters on feature selection, classification, and clustering of microarray data. We then discuss the modeling, analysis, and simulation of biological regulatory networks, especially gene regulatory networks based on Boolean and Bayesian approaches. Visualization and compression of gene data, and supercomputer implementation of genomic signal processing systems are also treated. Finally, we discuss systems biology and medical applications of genomic research as well as the future trends in genomic signal processing and statistics research.

Genetic Engineering of Plants

Genetic Engineering of Plants
Author: National Research Council
Publisher: National Academies Press
Total Pages: 97
Release: 1984-02-01
Genre: Science
ISBN: 0309034345

"The book...is, in fact, a short text on the many practical problems...associated with translating the explosion in basic biotechnological research into the next Green Revolution," explains Economic Botany. The book is "a concise and accurate narrative, that also manages to be interesting and personal...a splendid little book." Biotechnology states, "Because of the clarity with which it is written, this thin volume makes a major contribution to improving public understanding of genetic engineering's potential for enlarging the world's food supply...and can be profitably read by practically anyone interested in application of molecular biology to improvement of productivity in agriculture."

Genetic Algorithms

Genetic Algorithms
Author: Kim-Fung Man
Publisher: Springer Science & Business Media
Total Pages: 346
Release: 2012-12-06
Genre: Mathematics
ISBN: 144710577X

This comprehensive book gives a overview of the latest discussions in the application of genetic algorithms to solve engineering problems. Featuring real-world applications and an accompanying disk, giving the reader the opportunity to use an interactive genetic algorithms demonstration program.