EMBOSS Administrator's Guide

EMBOSS Administrator's Guide
Author: Alan J. Bleasby
Publisher: Cambridge University Press
Total Pages: 175
Release: 2011-06-16
Genre: Science
ISBN: 1139497928

The European Molecular Biology Open Software Suite (EMBOSS) is a high quality package of open source software tools for molecular biology. It includes over 200 applications integrated with a range of popular third party software packages under a consistent and powerful command line interface. The tools are available from a wide range of graphical interfaces, including easy to use web interfaces and powerful workflow software. The EMBOSS Administrator's Guide is the official, definitive and comprehensive guide to EMBOSS installation and maintenance: • Find all the information needed to configure, install and maintain EMBOSS, including recent additions for version 6.2 • Step-by-step instructions with real-world examples - saves readers time and helps them avoid the pitfalls on all the common platforms • In-depth reference to database configuration - learn how to set up and use databases under EMBOSS • Includes EMBOSS Frequently Asked Questions (FAQ) with answers - quickly find solutions to common problems

EMBOSS Developer's Guide

EMBOSS Developer's Guide
Author: Jon C. Ison
Publisher: Cambridge University Press
Total Pages: 653
Release: 2011-06-16
Genre: Science
ISBN: 1139500279

The European Molecular Biology Open Software Suite (EMBOSS) is a high quality, well documented package of open source software tools for molecular biology. EMBOSS includes extensive and extensible C programming libraries, providing a powerful and robust toolkit for developing new bioinformatics tools from scratch. The EMBOSS Developer's Guide is the official and definitive guide to developing software under EMBOSS. It includes comprehensive reference information and guidelines, including step-by-step instructions and real-world code examples: • Learn how to write fully-featured tools guided by the people who developed EMBOSS • Step-by-step guide to writing EMBOSS applications, illustrated with functional, deployed code • ACD file development - learn how to customise existing tools without coding, or design and write entirely new application interfaces • EMBOSS API programming guidelines - quickly master application development • Wrapping and porting applications under EMBOSS - learn how to incorporate third-party tools

EMBOSS User's Guide

EMBOSS User's Guide
Author: Peter M. Rice
Publisher: Cambridge University Press
Total Pages: 405
Release:
Genre:
ISBN: 052184519X

The European Molecular Biology Open Software Suite (EMBOSS) is a well established, high quality package of open source software tools for molecular biology. It includes over 200 applications for molecular sequence analysis and general bioinformatics including sequence alignment, rapid database searching and sequence retrieval, motif identification and pattern analysis and much more. The EMBOSS User's Guide is the official and definitive guide to the package, containing comprehensive information and practical instructions from the people who developed it: • No prior experience with EMBOSS necessary • Set up and maintenance - get up and running quickly • Hands-on tutorial - learn EMBOSS the easy way, by working through practical examples • Data types and file formats - learn about the biological data that can be manipulated and analysed • In-depth explanation of the EMBOSS command line - learn advanced 'power user' features • Practical guides to popular EMBOSS GUIs (wEMBOSS and Jemboss)

EMBOSS User's Guide

EMBOSS User's Guide
Author: Peter M. Rice
Publisher: Cambridge University Press
Total Pages: 394
Release: 2011-06-16
Genre: Science
ISBN: 9780521607254

The European Molecular Biology Open Source Software Suite (EMBOSS) is the premier Open Source package of tools for molecular biology analysis and bioinformatics. Practical Bioinformatics with EMBOSS is the official and definitive guide to the package. It includes comprehensive information and practical instructions, including an in-depth tutorial and guidelines on common ways to use the package. It is written specifically for biologists, bioinformaticians and other end-users, and no prior experience with EMBOSS is assumed.

Bioinformatics Biocomputing and Perl

Bioinformatics Biocomputing and Perl
Author: Michael Moorhouse
Publisher: John Wiley & Sons
Total Pages: 506
Release: 2005-09-27
Genre: Medical
ISBN: 0470026456

Bioinformatics, Biocomputing and Perl presents a modern introduction to bioinformatics computing skills and practice. Structuring its presentation around four main areas of study, this book covers the skills vital to the day-to-day activities of today’s bioinformatician. Each chapter contains a series of maxims designed to highlight key points and there are exercises to supplement and cement the introduced material. Working with Perl presents an extended tutorial introduction to programming through Perl, the premier programming technology of the bioinformatics community. Even though no previous programming experience is assumed, completing the tutorial equips the reader with the ability to produce powerful custom programs with ease. Working with Data applies the programming skills acquired to processing a variety of bioinformatics data. In addition to advice on working with important data stores such as the Protein DataBank, SWISS-PROT, EMBL and the GenBank, considerable discussion is devoted to using bioinformatics data to populate relational database systems. The popular MySQL database is used in all examples. Working with the Web presents a discussion of the Web-based technologies that allow the bioinformatics researcher to publish both data and applications on the Internet. Working with Applications shifts gear from creating custom programs to using them. The tools described include Clustal-W, EMBOSS, STRIDE, BLAST and Xmgrace. An introduction to the important Bioperl Project concludes this chapter and rounds off the book.