Dynamics Of Boolean Networks
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Author | : Ilya Shmulevich |
Publisher | : SIAM |
Total Pages | : 276 |
Release | : 2010-01-21 |
Genre | : Mathematics |
ISBN | : 0898716926 |
The first comprehensive treatment of probabilistic Boolean networks, unifying different strands of current research and addressing emerging issues.
Author | : Kazem Mahdavi |
Publisher | : World Scientific |
Total Pages | : 181 |
Release | : 2007 |
Genre | : Science |
ISBN | : 9812700153 |
This volume is a collection of papers on various areas of current interest in mathematical biology, such as epidemic disease modeling, including the effects of vaccination and strain replacement; immunology, such as T-Cell dynamics and the mechanism of phagocytosis; knot theory; DNA computation; and Boolean networks.
Author | : Daizhan Cheng |
Publisher | : Springer Science & Business Media |
Total Pages | : 474 |
Release | : 2010-11-23 |
Genre | : Science |
ISBN | : 0857290975 |
Analysis and Control of Boolean Networks presents a systematic new approach to the investigation of Boolean control networks. The fundamental tool in this approach is a novel matrix product called the semi-tensor product (STP). Using the STP, a logical function can be expressed as a conventional discrete-time linear system. In the light of this linear expression, certain major issues concerning Boolean network topology – fixed points, cycles, transient times and basins of attractors – can be easily revealed by a set of formulae. This framework renders the state-space approach to dynamic control systems applicable to Boolean control networks. The bilinear-systemic representation of a Boolean control network makes it possible to investigate basic control problems including controllability, observability, stabilization, disturbance decoupling etc.
Author | : Samuli Niiranen |
Publisher | : Springer Science & Business Media |
Total Pages | : 234 |
Release | : 2011-03-10 |
Genre | : Technology & Engineering |
ISBN | : 3642196217 |
Living beings require constant information processing for survival. In cells, information is being processed and propagated at various levels, from the gene regulatory network to chemical pathways, to the interaction with the environment. How this is achieved and how information is coded is still poorly understood. For example, what a cell interprets as information in the temporal level of an mRNA and what is interpreted as noise remains an open question. Recently, information theoretical methods and other tools, developed in the context of engineering and natural sciences, have been applied to study diverse biological processes. This book covers the latest findings on how information is processed in various biological processes, ranging from information processing and propagation in gene regulatory networks to information processing in natural language. An overview is presented of the state-of-the-art in information processing in biological systems and the opinion of current leaders in this research field on future research directions.
Author | : David P. Rosin |
Publisher | : Springer |
Total Pages | : 208 |
Release | : 2014-12-31 |
Genre | : Science |
ISBN | : 3319135783 |
This thesis focuses on the dynamics of autonomous Boolean networks, on the basis of Boolean logic functions in continuous time without external clocking. These networks are realized with integrated circuits on an electronic chip as a field programmable gate array (FPGA) with roughly 100,000 logic gates, offering an extremely flexible model system. It allows fast and cheap design cycles and large networks with arbitrary topologies and coupling delays. The author presents pioneering results on theoretical modeling, experimental realization, and selected applications. In this regard, three classes of novel dynamic behavior are investigated: (i) Chaotic Boolean networks are proposed as high-speed physical random number generators with high bit rates. (ii) Networks of periodic Boolean oscillators are home to long-living transient chimera states, i.e., novel patterns of coexisting domains of spatially coherent (synchronized) and incoherent (desynchronized) dynamics. (iii) Excitable networks exhibit cluster synchronization and can be used as fast artificial Boolean neurons whose spiking patterns can be controlled. This work presents the first experimental platform for large complex networks, which will facilitate exciting future developments.
Author | : Andrew Wuensche |
Publisher | : Luniver Press |
Total Pages | : 538 |
Release | : 2011 |
Genre | : Computers |
ISBN | : 1905986319 |
EXPLORING DISCRETE DYNAMICS is a comprehensive guide to studying cellular automata and discrete dynamical networks with the classic software Discrete Dynamics Laboratory (DDLab). These collective networks are at the core of complexity and emergent self-organisation. With interactive graphics, DDLab is able to explore an huge diversity of behaviour -- mostly terra incognita -- space-time patters, but also basins of attraction, mathematical objects representing the convergent flow in state-space. Applications range within physics, mathematics, biology, cognition, society, economics and computation, and more specifically in neural and genetic networks, artificial life, and a theory of memory.
Author | : Paul E. Dunne |
Publisher | : |
Total Pages | : 526 |
Release | : 1988 |
Genre | : Mathematics |
ISBN | : |
Author | : Stefano Boccaletti |
Publisher | : World Scientific |
Total Pages | : 465 |
Release | : 2010 |
Genre | : Science |
ISBN | : 9812838791 |
Networked systems are all around us. The accumulated evidence of systems as complex as a cell cannot be fully understood by studying only their isolated constituents, giving rise to a new area of interest in research ? the study of complex networks. In a broad sense, biological networks have been one of the most studied networks, and the field has benefited from many important contributions. By understanding and modeling the structure of a biological network, a better perception of its dynamical and functional behavior is to be expected. This unique book compiles the most relevant results and novel insights provided by network theory in the biological sciences, ranging from the structure and dynamics of the brain to cellular and protein networks and to population-level biology.
Author | : Katsuhisa Horimoto |
Publisher | : Springer Science & Business Media |
Total Pages | : 256 |
Release | : 2008-07-18 |
Genre | : Computers |
ISBN | : 3540851003 |
This book constitutes the refereed proceedings of the Third International Conference on Algebraic Biology, AB 2008, held at the Castle of Hagenberg, Austria in July 2008 as part of the RISC Summer 2008, organized by the Research Institute for Symbolic Computation. The 14 revised full papers presented together with 3 tutorial lectures were carefully reviewed and selected from 27 submissions. The conference is the interdisciplinary forum for the presentation of research on all aspects of applications of symbolic computation (computer algebra, computational logic, and related methods) to various issues in biology and life sciences as well as other problems in biology being approached with symbolic methods.
Author | : Joseph T. Lizier |
Publisher | : Springer Science & Business Media |
Total Pages | : 249 |
Release | : 2012-11-06 |
Genre | : Technology & Engineering |
ISBN | : 3642329527 |
The nature of distributed computation in complex systems has often been described in terms of memory, communication and processing. This thesis presents a complete information-theoretic framework to quantify these operations on information (i.e. information storage, transfer and modification), and in particular their dynamics in space and time. The framework is applied to cellular automata, and delivers important insights into the fundamental nature of distributed computation and the dynamics of complex systems (e.g. that gliders are dominant information transfer agents). Applications to several important network models, including random Boolean networks, suggest that the capability for information storage and coherent transfer are maximised near the critical regime in certain order-chaos phase transitions. Further applications to study and design information structure in the contexts of computational neuroscience and guided self-organisation underline the practical utility of the techniques presented here.