Computer Analysis of Sequence Data, Part I

Computer Analysis of Sequence Data, Part I
Author: Annette M. Griffin
Publisher: Springer Science & Business Media
Total Pages: 370
Release: 2008-02-02
Genre: Science
ISBN: 1592595111

DNA sequencing has become increasingly efficient over the years, resulting in an enormous increase in the amount of data gen- ated. In recent years, the focus of sequencing has shifted, from being the endpoint of a project, to being a starting point. This is especially true for such major initiatives as the human genome project, where vast tracts of DNA of unknown function are sequenced. This sheer volume of available data makes advanced computer methods ess- tial to analysis, and a familiarity with computers and sequence ana- sis software a vital requirement for the researcher involved with DNA sequencing. Even for nonsequencers, a familiarity with sequence analysis software can be important. For instance, gene sequences already present in the databases can be extremely useful in the design of cloning and genetic manipulation experiments. This two-part work on Analysis of Data is designed to be a practical aid to the researcher who uses computers for the acquisition, storage, or analysis of nucleic acid (and/or p- tein) sequences. Each chapter is written such that a competent sci- tist with basic computer literacy can carry out the procedure successfully at the first attempt by simply following the detailed pr- tical instructions that have been described by the author. A Notes section, which is included at the end of each chapter, provides advice on overcoming the common problems and pitfalls sometimes enco- tered by users of the sequence analysis software. Software packages for both the mainframe and personal computers are described.

Biological Sequence Analysis

Biological Sequence Analysis
Author: Richard Durbin
Publisher: Cambridge University Press
Total Pages: 372
Release: 1998-04-23
Genre: Science
ISBN: 113945739X

Probabilistic models are becoming increasingly important in analysing the huge amount of data being produced by large-scale DNA-sequencing efforts such as the Human Genome Project. For example, hidden Markov models are used for analysing biological sequences, linguistic-grammar-based probabilistic models for identifying RNA secondary structure, and probabilistic evolutionary models for inferring phylogenies of sequences from different organisms. This book gives a unified, up-to-date and self-contained account, with a Bayesian slant, of such methods, and more generally to probabilistic methods of sequence analysis. Written by an interdisciplinary team of authors, it aims to be accessible to molecular biologists, computer scientists, and mathematicians with no formal knowledge of the other fields, and at the same time present the state-of-the-art in this new and highly important field.

Computer Analysis of Sequence Data Part II

Computer Analysis of Sequence Data Part II
Author: Annette M. Griffin
Publisher: Springer Science & Business Media
Total Pages: 434
Release: 2008-02-02
Genre: Science
ISBN: 159259512X

DNA sequencing has become increasingly efficient over the years, resulting in an enormous increase in the amount of data gener ated. In recent years, the focus of sequencing has shifted, from being the endpoint of a project, to being a starting point. This is especially true for such major initiatives as the human genome project, where vast tracts of DNA of unknown function are sequenced. This sheer volume of available data makes advanced computer methods essen tial to analysis, and a familiarity with computers and sequence analy sis software a vital requirement for the researcher involved with DNA sequencing. Even for nonsequencers, a familiarity with sequence analysis software can be important. For instance, gene sequences already present in the databases can be extremely useful in the design of cloning and genetic manipulation experiments. This two-part work on Computer Analysis of Sequence Data is designed to be a practical aid to the researcher who uses computers for the acquisition, storage, or analysis of nucleic acid (and/or pro tein) sequences. Each chapter is written such that a competent scien tist with basic computer literacy can carry out the procedure successfully at the first attempt by simply following the detailed prac tical instructions that have been described by the author. A Notes section, which is included at the end of each chapter, provides advice on overcoming the common problems and pitfalls sometimes encoun tered by users of the sequence analysis software.

Computer Analysis Of Genetic Macromolecules: Structure, Function And Evolution

Computer Analysis Of Genetic Macromolecules: Structure, Function And Evolution
Author: Nikolay A Kolchanov
Publisher: World Scientific
Total Pages: 584
Release: 1994-03-29
Genre: Science
ISBN: 9814504270

Molecular biology and genetics are fast-growing fields with significant results and findings being reported virtually every day. Raw data from the wet lab accumulate at an astonishing rate, making it necessary to analyze the biological data with the use of computers. This book reveals how the current challenges of molecular biology and genetics are met with computer and mathematical treatments. A combined effort of the Computational Genetics and Biophysics Group (Supercomputer Computations Research Institute, USA), the Theoretical Molecular Genetics (Russian Academy of Sciences, Russia) and the Bioinformatics Group (Consiglio Nazionale delle Ricerche, Italy), many of these findings are firsthand discoveries made by these groups. The book emphasizes the fundamental principles of the structural-functional organization of the 3 major classes of genetic macromolecules: DNA, RNA and proteins. It also introduces universally applicable theoretical principles into the enormous realm of raw data and develops an integrative, theoretical computer approach to the analysis of these macromolecules to gain insights into the complexities of their function and evolution.

Computer Analysis of Images and Patterns

Computer Analysis of Images and Patterns
Author: Mario Vento
Publisher: Springer Nature
Total Pages: 617
Release: 2019-08-23
Genre: Computers
ISBN: 3030298914

The two volume set LNCS 11678 and 11679 constitutes the refereed proceedings of the 18th International Conference on Computer Analysis of Images and Patterns, CAIP 2019, held in Salerno, Italy, in September 2019. The 106 papers presented were carefully reviewed and selected from 176 submissions The papers are organized in the following topical sections: Intelligent Systems; Real-time and GPU Processing; Image Segmentation; Image and Texture Analysis; Machine Learning for Image and Pattern Analysis; Data Sets and Benchmarks; Structural and Computational Pattern Recognition; Posters.

Computer Analysis of Images and Patterns

Computer Analysis of Images and Patterns
Author: Ainhoa Berciano
Publisher: Springer
Total Pages: 598
Release: 2011-08-19
Genre: Computers
ISBN: 3642236782

The two volume set LNCS 6854/6855 constitutes the refereed proceedings of the International Conference on Computer Analysis of Images and Patterns, CAIP 2011, which took place in Seville, Spain, August 29-31, 2011. The 138 papers presented together with 2 invited talks were carefully reviewed and selected from 286 submissions. The papers are organized in topical section on: motion analysis, image and shape models, segmentation and grouping, shape recovery, kernel methods, medical imaging, structural pattern recognition, Biometrics, image and video processing, calibration; and tracking and stereo vision.

Analysis for Computer Scientists

Analysis for Computer Scientists
Author: Michael Oberguggenberger
Publisher: Springer
Total Pages: 372
Release: 2018-10-24
Genre: Computers
ISBN: 3319911554

This easy-to-follow textbook/reference presents a concise introduction to mathematical analysis from an algorithmic point of view, with a particular focus on applications of analysis and aspects of mathematical modelling. The text describes the mathematical theory alongside the basic concepts and methods of numerical analysis, enriched by computer experiments using MATLAB, Python, Maple, and Java applets. This fully updated and expanded new edition also features an even greater number of programming exercises. Topics and features: describes the fundamental concepts in analysis, covering real and complex numbers, trigonometry, sequences and series, functions, derivatives, integrals, and curves; discusses important applications and advanced topics, such as fractals and L-systems, numerical integration, linear regression, and differential equations; presents tools from vector and matrix algebra in the appendices, together with further information on continuity; includes added material on hyperbolic functions, curves and surfaces in space, second-order differential equations, and the pendulum equation (NEW); contains experiments, exercises, definitions, and propositions throughout the text; supplies programming examples in Python, in addition to MATLAB (NEW); provides supplementary resources at an associated website, including Java applets, code source files, and links to interactive online learning material. Addressing the core needs of computer science students and researchers, this clearly written textbook is an essential resource for undergraduate-level courses on numerical analysis, and an ideal self-study tool for professionals seeking to enhance their analysis skills.

Computer Analysis of Images and Patterns

Computer Analysis of Images and Patterns
Author: Nicolas Tsapatsoulis
Publisher: Springer Nature
Total Pages: 295
Release: 2023-09-19
Genre: Computers
ISBN: 3031442407

This volume LNCS 14184 and 14185 constitutes the refereed proceedings of the 20th International Conference, CAIP 2023, in Limassol, Cyprus, in September 2023. The 54 full papers presented were carefully reviewed and selected from 67 submissions. They were organized in the following section as follows: Part I: PAR Contest 2023; Deep Learning; Machine Learning for Image and Pattern Analysis; and Object Recognition and Segmentation. Part II : Biometrics- Human Pose Estimation- Action Recognition; Biomedical Image and Pattern Analysis; and General Vision- AI Applications.

Computer Analysis of Images and Patterns

Computer Analysis of Images and Patterns
Author: Walter Kropatsch
Publisher: Springer Science & Business Media
Total Pages: 1025
Release: 2007-08-14
Genre: Computers
ISBN: 3540742719

The refereed proceedings of the 12th International Conference on Computer Analysis of Images and Patterns are presented in this volume. The papers cover motion detection and tracking, medical imaging, biometrics, color, curves and surfaces beyond two dimensions, reading characters, words and lines, image segmentation, shape, image registration and matching, signal decomposition and invariants, and features and classification.