Bridging Chromatin Architecture To Gene Expression
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| Author | : G. Tiana |
| Publisher | : CRC Press |
| Total Pages | : 370 |
| Release | : 2021-03-31 |
| Genre | : Genomics |
| ISBN | : 9780367780456 |
This book provides a timely summary of physical modeling approaches applied to biological datasets that describe conformational properties of chromosomes in the cell nucleus. The coverage ranges from introductory chapters to modeling aspects related to polymer physics, and data-driven models for genomic domains, and predicting 3D genome structur
| Author | : Renato Paro |
| Publisher | : Springer Nature |
| Total Pages | : 215 |
| Release | : 2021-03-23 |
| Genre | : Science |
| ISBN | : 3030686701 |
This open access textbook leads the reader from basic concepts of chromatin structure and function and RNA mechanisms to the understanding of epigenetics, imprinting, regeneration and reprogramming. The textbook treats epigenetic phenomena in animals, as well as plants. Written by four internationally known experts and senior lecturers in this field, it provides a valuable tool for Master- and PhD- students who need to comprehend the principles of epigenetics, or wish to gain a deeper knowledge in this field. After reading this book, the student will: Have an understanding of the basic toolbox of epigenetic regulation Know how genetic and epigenetic information layers are interconnected Be able to explain complex epigenetic phenomena by understanding the structures and principles of the underlying molecular mechanisms Understand how misregulated epigenetic mechanisms can lead to disease
| Author | : Oldenburg Oldenburg Press |
| Publisher | : |
| Total Pages | : 40 |
| Release | : 2016-01-29 |
| Genre | : |
| ISBN | : 9781523764426 |
HiC-Pro is an optimized and flexible pipeline for processing Hi-C data from raw reads to normalized contact maps. HiC-Pro maps reads, detects valid ligation products, performs quality controls and generates intra- and inter-chromosomal contact maps. It includes a fast implementation of the iterative correction method and is based on a memory-efficient data format for Hi-C contact maps. In addition, HiC-Pro can use phased genotype data to build allele-specific contact maps. We applied HiC-Pro to different Hi-C datasets, demonstrating its ability to easily process large data in a reasonable time. Source code and documentation are available at http://github.com/nservant/HiC-Pro.
| Author | : Christophe Lavelle |
| Publisher | : Academic Press |
| Total Pages | : 620 |
| Release | : 2017-10-27 |
| Genre | : Science |
| ISBN | : 012803503X |
Nuclear Architecture and Dynamics provides a definitive resource for (bio)physicists and molecular and cellular biologists whose research involves an understanding of the organization of the genome and the mechanisms of its proper reading, maintenance, and replication by the cell. This book brings together the biochemical and physical characteristics of genome organization, providing a relevant framework in which to interpret the control of gene expression and cell differentiation. It includes work from a group of international experts, including biologists, physicists, mathematicians, and bioinformaticians who have come together for a comprehensive presentation of the current developments in the nuclear dynamics and architecture field. The book provides the uninitiated with an entry point to a highly dynamic, but complex issue, and the expert with an opportunity to have a fresh look at the viewpoints advocated by researchers from different disciplines. - Highlights the link between the (bio)chemistry and the (bio)physics of chromatin - Deciphers the complex interplay between numerous biochemical factors at task in the nucleus and the physical state of chromatin - Provides a collective view of the field by a large, diverse group of authors with both physics and biology backgrounds
| Author | : Tri Wahyu S P |
| Publisher | : European Alliance for Innovation |
| Total Pages | : 378 |
| Release | : 2019-11-26 |
| Genre | : Social Science |
| ISBN | : 1631902091 |
The 1st International Conference On Culture, Education, Linguistics, and Literature (CELL) Universitas Jenderal Soedirman (Jenderal Soedirman University). The rapid development of information and communication technology on information continuously encourages the global society known as Industrial Revolution 4.0. It was first introduced by German Economist, Klaus Schwab, in his book entitled “The Fourth Industrial Technology” in 2012. The complexity and interconnected sector in our daily life urge all stakeholders of the global society (governments, business actors, academicians, and civil society) have the responsibility to work together. The conference invites delegates from across Indonesian and attended by more than 75 participants from university academics, researchers, practitioners, and professionals across a wide range of industries.
| Author | : Anita Göndör |
| Publisher | : Academic Press |
| Total Pages | : 498 |
| Release | : 2016-10-25 |
| Genre | : Science |
| ISBN | : 0128034025 |
Chromatin Regulation and Dynamics integrates knowledge on the dynamic regulation of primary chromatin fiber with the 3D nuclear architecture, then connects related processes to circadian regulation of cellular metabolic states, representing a paradigm of adaptation to environmental changes. The final chapters discuss the many ways chromatin dynamics can synergize to fundamentally contribute to the development of complex diseases. Chromatin dynamics, which is strategically positioned at the gene-environment interface, is at the core of disease development. As such, Chromatin Regulation and Dynamics, part of the Translational Epigenetics series, facilitates the flow of information between research areas such as chromatin regulation, developmental biology, and epidemiology by focusing on recent findings of the fast-moving field of chromatin regulation. - Presents and discusses novel principles of chromatin regulation and dynamics with a cross-disciplinary perspective - Promotes crosstalk between basic sciences and their applications in medicine - Provides a framework for future studies on complex diseases by integrating various aspects of chromatin biology with cellular metabolic states, with an emphasis on the dynamic nature of chromatin and stochastic principles - Integrates knowledge on the dynamic regulation of primary chromatin fiber with 3D nuclear architecture, then connects related processes to circadian regulation of cellular metabolic states, representing a paradigm of adaptation to environmental changes
| Author | : Remus T. Dame |
| Publisher | : Springer Nature |
| Total Pages | : 654 |
| Release | : |
| Genre | : |
| ISBN | : 1071639307 |
| Author | : Philippe Jeanteur |
| Publisher | : Springer Science & Business Media |
| Total Pages | : 272 |
| Release | : 2002-10-21 |
| Genre | : Science |
| ISBN | : 9783540438335 |
The discovery in 1977 that genes are split into exons and introns has done away with the one gene - one protein dogma. Indeed, the removal of introns from the primary RNA transcript is not necessarily straightforward since there may be optional pathways leading to different messenger RNAs and consequently to different proteins. Examples of such an alternative splicing mechanism cover all fields of biology. Moreover, there are plenty of occurrences where deviant splicing can have pathological effects. Despite the high number of specific cases of alternative splicing, it was not until recently that the generality and extent of this phenomenon was fully appreciated. A superficial reading of the preliminary sequence of the human genome published in 2001 led to the surprising, and even deceiving to many scientists, low number of genes (around 32,000) which contrasted with the much higher figure around 150,000 which was previously envisioned. Attempts to make a global assessment of the use of alternative splicing are recent and rely essentially on the comparison of genomic mRNA and EST sequences as reviewed by Thanaraj and Stamm in the first chapter of this volume. Most recent estimates suggest that 40-60% of human genes might be alternatively spliced, as opposed to about 22% for C. elegans.
| Author | : Mark C. Leake |
| Publisher | : Humana |
| Total Pages | : 0 |
| Release | : 2016-06-10 |
| Genre | : Medical |
| ISBN | : 9781493936298 |
This volume details a valuable collection of protocols and reviews, such as emerging experimental and theoretical approaches. These approaches have resulted in a substantial improvement in the understanding of chromosome architecture. Chromosome Architecture: Methods and Protocols guides readers through cutting-edge interdisciplinary methods which allow for an understanding of architecture of chromosomes with exceptionally enhanced resolution, both in terms of space and time. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls. Authoritative and cutting-edge, Chromosome Architecture: Methods and Protocols aims to ensure successful results in the further study of this vital field.
| Author | : J. Zlatanova |
| Publisher | : Gulf Professional Publishing |
| Total Pages | : 546 |
| Release | : 2004 |
| Genre | : Medical |
| ISBN | : 9780444515940 |
Biological processes that replicate, preserve and use the genetic information encoded in DNA must operate in the context of chromatin, a highly organized complex of DNA and proteins. These proteins do not merely package the DNA in the tiny volume of the nucleus, but impart the structure the ability to change according to the requirements of the specific process the DNA is involved in. Moreover, chromatin structure is used by the cell to control the activity of DNA. In this volume the basics of chromatin structure and dynamics are presented by established experts in the field.
