Biologically Motivated Statistical Physics And Related Problems
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Statphys-Taiwan-2004
| Author | : Statphys - Taiwan (7, 2004, Taibei) |
| Publisher | : |
| Total Pages | : 162 |
| Release | : 2004 |
| Genre | : Biophysics |
| ISBN | : |
From Statistical Physics to Data-Driven Modelling
| Author | : Simona Cocco |
| Publisher | : Oxford University Press |
| Total Pages | : 193 |
| Release | : 2022-09-09 |
| Genre | : Biology |
| ISBN | : 0198864744 |
The study of most scientific fields now relies on an ever-increasing amount of data, due to instrumental and experimental progress in monitoring and manipulating complex systems made of many microscopic constituents. How can we make sense of such data, and use them to enhance our understanding of biological, physical, and chemical systems? Aimed at graduate students in physics, applied mathematics, and computational biology, the primary objective of this textbook is to introduce the concepts and methods necessary to answer this question at the intersection of probability theory, statistics, optimisation, statistical physics, inference, and machine learning. The second objective of this book is to provide practical applications for these methods, which will allow students to assimilate the underlying ideas and techniques. While readers of this textbook will need basic knowledge in programming (Python or an equivalent language), the main emphasis is not on mathematical rigour, but on the development of intuition and the deep connections with statistical physics.
The Statistical Physics of Fixation and Equilibration in Individual-Based Models
| Author | : Peter Ashcroft |
| Publisher | : Springer |
| Total Pages | : 175 |
| Release | : 2016-07-29 |
| Genre | : Science |
| ISBN | : 3319412132 |
This thesis explores several interdisciplinary topics at the border of theoretical physics and biology, presenting results that demonstrate the power of methods from statistical physics when applied to neighbouring disciplines. From birth-death processes in switching environments to discussions on the meaning of quasi-potential landscapes in high-dimensional spaces, this thesis is a shining example of the efficacy of interdisciplinary research. The fields advanced in this work include game theory, the dynamics of cancer, and invasion of mutants in resident populations, as well as general contributions to the theory of stochastic processes. The background material provides an intuitive introduction to the theory and applications of stochastic population dynamics, and the use of techniques from statistical physics in their analysis. The thesis then builds on these foundations to address problems motivated by biological phenomena.
Statistical Physics for Biological Matter
| Author | : Wokyung Sung |
| Publisher | : Springer |
| Total Pages | : 444 |
| Release | : 2018-10-19 |
| Genre | : Science |
| ISBN | : 940241584X |
This book aims to cover a broad range of topics in statistical physics, including statistical mechanics (equilibrium and non-equilibrium), soft matter and fluid physics, for applications to biological phenomena at both cellular and macromolecular levels. It is intended to be a graduate level textbook, but can also be addressed to the interested senior level undergraduate. The book is written also for those involved in research on biological systems or soft matter based on physics, particularly on statistical physics. Typical statistical physics courses cover ideal gases (classical and quantum) and interacting units of simple structures. In contrast, even simple biological fluids are solutions of macromolecules, the structures of which are very complex. The goal of this book to fill this wide gap by providing appropriate content as well as by explaining the theoretical method that typifies good modeling, namely, the method of coarse-grained descriptions that extract the most salient features emerging at mesoscopic scales. The major topics covered in this book include thermodynamics, equilibrium statistical mechanics, soft matter physics of polymers and membranes, non-equilibrium statistical physics covering stochastic processes, transport phenomena and hydrodynamics. Generic methods and theories are described with detailed derivations, followed by applications and examples in biology. The book aims to help the readers build, systematically and coherently through basic principles, their own understanding of nonspecific concepts and theoretical methods, which they may be able to apply to a broader class of biological problems.
Perspectives And Challenges In Statistical Physics And Complex Systems For The Next Decade
| Author | : Gandhimohan M Viswanathan |
| Publisher | : World Scientific |
| Total Pages | : 346 |
| Release | : 2014-04-03 |
| Genre | : Science |
| ISBN | : 9814590150 |
Statistical Physics (SP) has followed an unusual evolutionary path in science. Originally aiming to provide a fundamental basis for another important branch of Physics, namely Thermodynamics, SP gradually became an independent field of research in its own right. But despite more than a century of steady progress, there are still plenty of challenges and open questions in the SP realm.In fact, the area is still rapidly evolving, in contrast to other branches of science, which already have well defined scopes and borderlines of applicability. This difference is due to the steadily expanding number of applications, as well as ongoing improvements and revisions of concepts and methods in SP. Such particular aspects of SP lend further significance and timeliness to this book about perspectives and trends within the field.Here, the aim is to present the state-of-the-art vision of expert researchers who study SP and Complex Systems. Although a comprehensive treatment is well beyond what can be treated in a single volume, the book provides a snapshot of the field today, as well as a glimpse of where the field may be heading during the next decade.The book is aimed at graduate and advanced undergraduate physics students, as well as researchers who work with SP, Complex Systems, Computational Physics, Biological Physics and related topics. It addresses questions such as: What insights can be gained from recent advances in the study of traditional problems in SP? How can SP help us understand problems that arise in the biological sciences and in the study of complex systems? How can new problems be formulated using the ‘language’ of SP? In this way, it attempts to document partial progress in answering these and related questions.The book also commemorates the occasion of the 70th anniversary in 2011 of two important physicists and friends who dedicated their lives to the understanding of nature in general and to the development of Statistical Physics and the science of Complexity in particular: Liacir Lucena and H Eugene Stanley.
Biological Evolution and Statistical Physics
| Author | : M. Lässig |
| Publisher | : Springer |
| Total Pages | : 340 |
| Release | : 2008-01-11 |
| Genre | : Science |
| ISBN | : 3540456929 |
This set of lecture notes gives a first coherent account of a novel aspect of the living world that can be called biological information. The book presents both a pedagogical and state-of-the art roadmap of this rapidly evolving area and covers the whole field, from information which is encoded in the molecular genetic code to the description of large-scale evolution of complex species networks. The book will prove useful for all those who work at the interface of biology, physics and information science.
Computational Biology
| Author | : Ralf Blossey |
| Publisher | : CRC Press |
| Total Pages | : 277 |
| Release | : 2006-05-25 |
| Genre | : Science |
| ISBN | : 1584885564 |
Quantitative methods have a particular knack for improving any field they touch. For biology, computational techniques have led to enormous strides in our understanding of biological systems, but there is still vast territory to cover. Statistical physics especially holds great potential for elucidating the structural-functional relationships in biomolecules, as well as their static and dynamic properties. Breaking New Ground Computational Biology: A Statistical Mechanics Perspective is the first book dedicated to the interface between statistical physics and bioinformatics. Introducing both equilibrium and nonequilibrium statistical mechanics in a manner tailored to computational biologists, the author applies these methods to understand and model the properties of various biomolecules and biological networks at the systems level. Unique Vision, Novel Approach Blossey combines his enthusiasm for uniting the fields of physics and computational biology with his considerable experience, knowledge, and gift for teaching. He uses numerous examples and tasks to illustrate and test understanding of the concepts, and he supplies a detailed keyword list for easy navigation and comprehension. His approach takes full advantage of the latest tools in statistical physics and computer science to build a strong set of tools for confronting new challenges in computational biology. Making the concepts crystal clear without sacrificing mathematical rigor, Computational Biology: A Statistical Mechanics Perspective is the perfect tool to broaden your skills in computational biology.
Statphys 22
| Author | : Sushanta Dattagupta |
| Publisher | : |
| Total Pages | : 600 |
| Release | : 2005 |
| Genre | : Bangalore, India |
| ISBN | : |
A Concise Introduction to the Statistical Physics of Complex Systems
| Author | : Eric Bertin |
| Publisher | : Springer Science & Business Media |
| Total Pages | : 85 |
| Release | : 2011-09-28 |
| Genre | : Science |
| ISBN | : 3642239234 |
This concise primer (based on lectures given at summer schools on complex systems and on a masters degree course in complex systems modeling) will provide graduate students and newcomers to the field with the basic knowledge of the concepts and methods of statistical physics and its potential for application to interdisciplinary topics. Indeed, in recent years, statistical physics has begun to attract the interest of a broad community of researchers in the field of complex system sciences, ranging from biology to the social sciences, economics and computer science. More generally, a growing number of graduate students and researchers feel the need to learn some basic concepts and questions originating in other disciplines without necessarily having to master all of the corresponding technicalities and jargon. Generally speaking, the goals of statistical physics may be summarized as follows: on the one hand to study systems composed of a large number of interacting ‘entities’, and on the other to predict the macroscopic (or collective) behavior of the system considered from the microscopic laws ruling the dynamics of the individual ‘entities’. These two goals are, to some extent, also shared by what is nowadays called ‘complex systems science’ and for these reasons, systems studied in the framework of statistical physics may be considered as among the simplest examples of complex systems—allowing in addition a rather well developed mathematical treatment.
